BAC Information

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BAC

Clone NameMSMg01-211B12
Chromosome1 (Build37)
Map Location 102,543,283 - 102,543,386
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211B12.T7 (MSMg01no211_b12.b1)MSMg01-211B12.TJ (MSMg01no211_b12.g1)
ACCAG392962AG392963
length815817
length of high quality
(start - end)
104 (177 - 280)54 (221 - 274)
definitionCHROMAT_FILE: MSMg01no211_b12.b1 PHD_FILE: MSMg01no211_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:57 2005CHROMAT_FILE: MSMg01no211_b12.g1 PHD_FILE: MSMg01no211_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCCCCTCTTTTCTTTTTTCTCCCCCCTTACCTCCCCCCTTNCCTTCCT
ATAATTGCGGCGCTAATACGACTCTTATAGCCAGAGGTCCGCGGAATTCA
TAGAGTTACCTATTTCTGCCTCCTCCATGGTGCTGATATTGATAATGTGC
ACTACCACAGCTGATTGCCATTTTTGAATATAACGTATCTGCATATATTA
ATTACATCCATTTATTAATTAAATACATTATGTGTAAATGTATTTTATGC
ATTTAATTATCTACAGGTTTCACACATATATCAGATGCACAAAACCTAAA
AGTTATTCTTACCTTACCAAGACAGAAAGGCTGCTTAGTTTTGGTTCCCA
CAGCCCTAGCTTTCTGGATTAAACACAATCTTTTCCTAACTCTTGCCTGT
ATTCTTCTTTTTTTTACCCCCCCCCCCCCCACTAATTTTTTTAAATAATT
TTCTTGCTCACAATTTATCCAAGAAATATAACGACCATGTTATCTACTCT
CAGTTTTGTGTGCCTACTATGTTATCCCTGATGTGTTGTTGTCCATGCAC
ATTTTACTATATCACTCGTCTATCTTTTGCCTTTTTTCTACCCACCCCAT
TTTTCCCCTTTTTTCCCCATTTTTATCCCTCTTCCCGTTTTTTATCCATT
TTGTCACACTGTACCGCCTGTTTTTCACTTCTTCCCATACGTTTTTTTTG
TCCCCTTTATCCACCCCACTCTCCCCCGTTTTCCCCTTCCCACTTTTCAC
CCCCATTTTTTTTTTTGCACCCCTCTTCGAGACGACCCCTCGTTTGTCCC
CTTTATAACCCATTC
TCCTCCCTCTTCTTTTCTCTCCCCTTTCCCTCCTTTCCCAACCCTTCCAC
TATGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGATTACCGTATTCTGCAGATCAGC
ACATCTGGTTGATAAGTTCTGAACATTTTGGGTCCCCTGACAGAAGGCTT
CAGTGTGAGATGACAAAGGGAGCCCTGTGCATGATGGTGACTCACATCAG
GGTCTGGAAACATCTTCATTTGAACATTCTGACAACTGAGTATTATTACA
GACGTTATCATCCACATATTTCATGACTCCCTGTACACTTCTGTTGTATT
TCCAGAATTTATAGGCCCTTATCCTATTTGTTACATAGAACACTTCATCA
TATACGTATGTCTTTCTTGTATCTCGCCCCCCCCCCCATTTAGGTTACTG
TCTACTTTTGCCAACCTACCCGTCTACTTGAAAAGAAACAAGCCTTGCGT
GAGACCCTGTCTAAAACTCTCTGTACACCCTATCTGACATATGACCCTCT
AGGTTGTTGTATTGGCTTTCTACACTATTCACTCGCACACCCCCTCCTTA
TTATTTTTACCTTTTCCTTCTACCGGCATTCCTTTCTCCAGATATCATTC
ACTCCTTGCACACGCATCGCTCCCGCCCCCATCTACTCCATTTTTTTTCC
CCTTTACGCGCTAACCGATCCCTTTTGTTCTCCCCCAGTGTTATTTCCCT
CATTGTGTCCCCTCGCCTTCCCACTTGTTCTTTTTATTCCTCCCTTCTCC
CCTCTTCTTTTGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_b12.b1 MSMg01no211_b12.b1 CHROMAT_FILE:
MSMg01no211_b12.b1 PHD_FILE: MSMg01no211_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:57 2005
         (104 letters)



>mm_chr1_102543083_102543586
          Length = 504

 Score =  194 bits (100), Expect = 2e-54
 Identities = 103/104 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatataacgtatctgcatatattaattacatccatttattaattaaatacattatgtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatataacgtatctgcatatattaattacatccatttattaattaaatacattatgtgta 260

                                                       
Query: 61  aatgtattttatgcatttaattatctacaggtttcacacatata 104
           ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aatgtattttatgcatttaattatctacatgtttcacacatata 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space:    47616
Effective search space used:    47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)