BAC Information

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BAC

Clone NameMSMg01-212A06
Chromosome1 (Build37)
Map Location 83,688,966 - 83,849,858
singlet/doubletdoublet
Overlap genenone
Upstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212A06.T7 (MSMg01no212_a06.b1)MSMg01-212A06.TJ (MSMg01no212_a06.g1)
ACCAG393526AG393527
length738719
length of high quality
(start - end)
271 (42 - 312)287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no212_a06.b1 PHD_FILE: MSMg01no212_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:40 2005CHROMAT_FILE: MSMg01no212_a06.g1 PHD_FILE: MSMg01no212_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,688,966 - 83,689,232)(83,849,577 - 83,849,858)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATATTCTGATACTGAAAGAAAACAGGTAGCCAAACTATAATATCATAAT
AGACAATCTTTTACCATTCCATGAGAAATAAATGTTATAAGAAATGATTA
TTTTTAATTATTATTTGATTGACTCAAAGAAGGCAAGTTCTGGAGGTGGT
TGTGAGAAGTACAGATCTCCTCTCCAAGCCCTTCAGATTCAATGACACAA
CCTTTCCTCTGGAAACTATATTTGTCATTTAATATACTTCACTTCCTCGT
AATATACTTCAATTATTCTGTCATGTTGCCTTGCTGCAGTTGGTCTAAGT
CTTTTTTTATTTCCCCCCCCCCCCCGCCATATCATCTCACTGGGTTTCCT
AATGTTTTCCCCCCCCGAAAAACACTTGTACTATTTTGAGCTCCATTTAA
ATGATATAACGCCCCCATCGCTAAACCTCGCGTTCTTTGCCTACCTTACT
ACCCCTGATCTATTATTGTATGATTCGCCATTCTGGATACCTATCCATCC
CCACCTTTGCCTCTTATTATTTAAACTAAAATAATCGATCTTCGCCGCAT
ATACCTCTCTTTTCTGTTTGATTCAACCTTCGTTTTCCCCCGATCCTTCC
CCCTTATTTACCCCCTTATCACTACCGGTAATTAACTTCCCCCCCACATA
TCTTACCAACCCCAAAAATAAATAATTTCACACACTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATACCTTTTTAAAATAGATAAAATTTAG
AATATCCTTCCCCCATACGGATCCCATATAATTGGGCAATGGCCTGTGAC
TAATACATTTGATTTAAAGTATCAAAAATGCATTTGAGCCCACTGCAAGA
ATATGTGTGTAAAGTTACTTAAAAGACGATTGGTGATTCAGGCAGCTGCA
CAGCCCAAAAGTACCCTGTGCAGAGTCTTGAACAAGTGAAAGCTTTATCC
TTGTAGTTACCTGCCCAACTGGCAGCCAACAGCTCTCCCAACATCTCCTT
TCCTATTGCCTCAACACCCCCCCCCCTCTTTCCTTCCCTCAGGGGTTGTA
ACCTCATGGTATCCCCCAATTTCATGAGCTTCCTAAATCTTATAAACTTT
TTCTTGTCTAAAGAGAATCTTCAGTCTAGACGGCAATGGTGTCCAAAAGC
TAAGTCTTTTAAATCTGCCCCCCTATGGAATGAATGATCGGTTCTCCAGC
TCCAAAATTGCTTCTGCTAAAGATCTAAGCTCTAATGCGATACCATTATC
ACACTGTGCCTTTAGGACAGATAATTGGCCTATGCATTTATATGTCAATA
TTGGATTAATTATTACAGATATTGCCTGTATGATAAGAGTCCTGCTTAGT
TTATACTCGCATCTCATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_a06.b1 MSMg01no212_a06.b1 CHROMAT_FILE:
MSMg01no212_a06.b1 PHD_FILE: MSMg01no212_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:40 2005
         (271 letters)



>mm_chr1_83688762_83689432
          Length = 671

 Score =  470 bits (243), Expect = e-137
 Identities = 261/267 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatattctgatactgaaagaaaacaggtagccaaactataatatcataatagaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatattctgatactgaaagaaaacaggtagccaaactataatatcataatagaca 264

                                                                       
Query: 65  atcttttaccattccatgagaaataaatgttataagaaatgattatttttaattattatt 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcttttaccattgaatgagaaataaatgttataagaaatgattatttttaattattatt 324

                                                                       
Query: 125 tgattgactcaaagaaggcaagttctggaggtggttgtgagaagtacagatctcctctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgattgactcaaagaaggcaagttctggaggtggttgtgagaagtacagatctcctctcc 384

                                                                       
Query: 185 aagcccttcagattcaatgacacaacctttcctctggaaactatatttgtcatttaatat 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagcccttcagcttcaatgacacaacctttcctctggaaactatatttgtcatttaatat 444

                                      
Query: 245 acttcacttcctcgtaatatacttcaa 271
           |||||| ||||||| |||| |||||||
Sbjct: 445 acttcaattcctcggaatacacttcaa 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no212_a06.g1 MSMg01no212_a06.g1 CHROMAT_FILE:
MSMg01no212_a06.g1 PHD_FILE: MSMg01no212_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:40 2005
         (287 letters)



>mm_chr1_83849377_83850063
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacctttttaaaatagataaaatttagaatatccttcccccatacggatcccatataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tatacctttttaaaatagataaaatttagaatatccttcccccatacggatcccatataa 423

                                                                       
Query: 61  ttgggcaatggcctgtgactaatacatttgatttaaagtatcaaaaatgcatttgagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttgggcaatggcctgtgactaatacatttgatttaaagtatcaaaaatgcatttgagccc 363

                                                                       
Query: 121 actgcaagaatatgtgtgtaaagttacttaaaagacgattggtgattcaggcagctgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 actgcaagaatatgtgtgtaaagttacttaaaagacgattggtgattcaggcagctgcac 303

                                                                       
Query: 181 agcccaaaagtaccctgtgcagagtcttgaacaagtgaaagctttatccttgtagttacc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 302 agcccaaaagtaccctgtgcagagtcatgaacaagtgaaagctttatccttgtagttacc 243

                                                     
Query: 241 tgcccaactggcagccaacagctctcccaacatctcctttcc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgcccaactggcagccaacagctctcccaacatctcctttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)