BAC Information

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BAC

Clone NameMSMg01-212F16
Chromosome1 (Build37)
Map Location 78,520,687 - 78,520,968
singlet/doubletsinglet
Overlap geneMogat1
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb
Downstream geneAcsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212F16.T7 (MSMg01no212_f16.b1)MSMg01-212F16.TJ (MSMg01no212_f16.g1)
ACCAG393743
length739816
length of high quality
(start - end)
---283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no212_f16.b1 PHD_FILE: MSMg01no212_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:06 2005CHROMAT_FILE: MSMg01no212_f16.g1 PHD_FILE: MSMg01no212_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCAGTATATTCAAATGTGGAAAAC
AGCCATGCATCAAATAAATGATAAATTGCCCTCTGCAGAGGTATGCTGAA
TGCTGGACCTAGAAAAATGTCTTCCACTATGTCTCACAGTAGCAATAGTG
ACATAAACTAATCAGTGTGTTTGCTAGCTTTGTCATCCTAGGTTGTGTGT
AACTCCTAGGGTTGTGGATGTTGTCATTGGTACAGTGTTTGTCTAGCATG
AGCAAAGCTACCTCCTGATCTACAAGGAAAGAAAAGAAGGGGGAGGGGAG
GGGAGGGTATGTTTTTTTCCCCCCCCCACCCCCCNNTNTTNNTNTTTTTG
GGGTTTGTTGTTGTTTGCCCCCACAAAAAAAAAAAAAAAAAGTGGGTGGG
GGTGGGGCGTTTTATCTATGCTTTTTCATCCACCTATTTACCTTTTCCTT
ATATCGCTTTTTTTTTTTACATCTGTACGCGGTTATTTATATTTTCTATT
TTTTTCATTTTTCCCATCGCTACAGTCTACATTATTTTCCTCTTCTTATA
CTAAATGTTTCTTTCAATTGCTTTTCCCTCTACTTTCTTCATCTTACCCT
TGTTATTCTTCTCTACTTTACCCTTTTTATTTATCTTTCGCTTTTTTATC
TCTTTTTTTGTCTCTTCCTTCTTCCCCATCTTTTTTGTTTCCCAGATAAA
GTTGTCTCTCTTCCCTTCCCCCGTTCCTACTCTTACCCACCTTTTTAATA
ACACTTTCATTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_f16.g1 MSMg01no212_f16.g1 CHROMAT_FILE:
MSMg01no212_f16.g1 PHD_FILE: MSMg01no212_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:06 2005
         (283 letters)



>mm_chr1_78520487_78521168
          Length = 682

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcagtatattcaaatgtggaaaacagccatgcatcaaataaatgataaattgccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcagtatattcaaatgtggaaaacagccatgcatcaaataaatgataaattgccctct 260

                                                                       
Query: 61  gcagaggtatgctgaatgctggacctagaaaaatgtcttccactatgtctcacagtagca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gcagaggtatgctgaatgctggacctagaaaa-tgtcttccactatgtctcacagtagca 319

                                                                       
Query: 121 atagtgacataaactaatcagtgtgtttgctagctttgtcatcctaggttgtgtgtaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atagtgacataaactaatcagtgtgtttgctagctttgtcatcctaggttgtgtgtaact 379

                                                                       
Query: 181 cctagggttgtggatgttgtcattggtacagtgtttgtctagcatgagcaaagctacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctagggttgtggatgttgtcattggtacagtgtttgtctagcatgagcaaagctacctc 439

                                                      
Query: 241 ctgatctacaaggaaagaaaagaagggggaggggaggggaggg 283
           |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 ctgatctacaaggaaagaaaagaagggggaggggagggaaggg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space:   184402
Effective search space used:   184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)