BAC Information

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BAC

Clone NameMSMg01-212L06
Chromosome1 (Build37)
Map Location 101,018,753 - 101,019,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212L06.T7 (MSMg01no212_l06.b1)MSMg01-212L06.TJ (MSMg01no212_l06.g1)
ACCAG393962AG393963
length732734
length of high quality
(start - end)
326 (51 - 376)288 (80 - 367)
definitionCHROMAT_FILE: MSMg01no212_l06.b1 PHD_FILE: MSMg01no212_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:33 2005CHROMAT_FILE: MSMg01no212_l06.g1 PHD_FILE: MSMg01no212_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAAAAAGATGTCAGAAGATAGTAAGATGTTCATGCTCATG
GACTGATAAGATTAACATAGTAAAAATGGCCATCTTACCAAAAGCAATCT
ACAGATCAAATTTAGTCTGCATCAAATTTCCAACACAATTCTTTCCAGCT
ATGTAAAGAATGATTCTCAACTTCATATAAAGAAAAAAATCAGGATAGCC
TATGCAGTTCTCATCAATAAAAGATCTTCTCTAGAAATCACTGTCCCTGA
CTTCAAGCTGTACTACAAAGCAATAGTGATAAAGAGCACATAACTTTGTT
ACAGGGACAGTCAGGTAAATGAATGCCACACAACAAACAGAGTTTATTCA
GGGCAAAGGGATAGGGAGGGGAGTTAAGAGTATAGTAGAGGTAAAGTAAG
TTAGAGAGAAAGAGAGAGTGTTACAGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
ACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTATTTGATTAATTAGAT
TAGTTTAGTAGAAGGGTCTTTTGCTTTAGGGAATTATTAGGTTATCGTAT
CAAAACTGCGCACTTCTTTTATGAGAAATTTTGCCTTGGGTGTAAGCAGA
AATGTGTTTAGTGGATGATTAAGATGATACAATTTTGTTAATTCTCTAAG
AGAAAAACATCATAAGGTGGCAAAAATAAAATTAGGTTCATAAAACTCCA
TATAAGACAAAAGCTGTTATAGGAATGAAGCCAATGTACCCCACCCCTGC
CCCTTTTATTGAATGGTGTTATATTCCACCCAGACAAACATGGAATGGGA
ACTATTTATGCCAATGTATATTTGTTAAGGGATCATCGCTTTTATATTTC
TGTTCACAGCTCTTCTCAGCATAGGCTGAAATCTAGATGTGAGCTCAACT
GGGATCAAGTAGAGACAACAATCAATGAGTTAGAAGAGATGCTGGGATAA
GAACTATCTGCCATAATTATGCTTCACTCCTCTGTGGCTTTTTTTTTTTT
TTTTTTTTTTTTAGGGAGATTTGAGCAAATACTTATGCACCTCAGATTAC
ACCACTGACAGACTAAATGAATGATTTCACCAAGTCTAGCCTAGGGAACC
AGTGAATTTAATAAGTTTATCAGATCACGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_l06.g1 MSMg01no212_l06.g1 CHROMAT_FILE:
MSMg01no212_l06.g1 PHD_FILE: MSMg01no212_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:33 2005
         (288 letters)



>mm_chr1_101018553_101019240
          Length = 688

 Score =  495 bits (256), Expect = e-144
 Identities = 280/288 (97%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctatttgattaattagattagtttagtagaagggtcttttgctttagggaattatta 60
           |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 agtctatttggttaattagattagtttagtagaaggatcttttgctttagggaattatta 260

                                                                       
Query: 61  ggttatcgtatcaaaactgcgcacttcttttatgagaaattttgccttgggtgtaagcag 120
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttaccgtatgaaaactgcgcacttcttttatgagaaattttgccttgggtgtaagcag 320

                                                                       
Query: 121 aaatgtgtttagtggatgattaaga-tgatacaattttgttaattctctaagagaaaaac 179
           ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 321 aaatgtgtttagtggatgattaa-agtgatagaattttgttaattctctaagagaaaaac 379

                                                                       
Query: 180 atcataaggtggcaaaaataaaattaggttcataaaactccatataagacaaaagctgtt 239
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 atcataaggtggcaaaaataaaattaggttcataaaaccccatataagacaaaagctgtt 439

                                                           
Query: 240 ataggaatgaagccaatgtaccccacccctgccccttttattgaatgg 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ataggaatgaagccaatgtaccccacccctgccccttttattgaatgg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)