BAC Information

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BAC

Clone NameMSMg01-213G21
Chromosome1 (Build37)
Map Location 63,769,578 - 63,916,100
singlet/doubletdoublet
Overlap geneMdh1b, Fastkd2, 4933402D24Rik
Upstream geneNrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215
Downstream geneLOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213G21.T7 (MSMg01no213_g21.b1)MSMg01-213G21.TJ (MSMg01no213_g21.g1)
ACCAG394424AG394425
length727725
length of high quality
(start - end)
237 (120 - 356)286 (67 - 352)
definitionCHROMAT_FILE: MSMg01no213_g21.b1 PHD_FILE: MSMg01no213_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:27 2005CHROMAT_FILE: MSMg01no213_g21.g1 PHD_FILE: MSMg01no213_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,769,578 - 63,769,814)(63,915,816 - 63,916,100)
sequence
TTGCGGCCGCTNTACGACTCCTATAGTTTCGAGGATCCGCGGAATTCTCT
GAGTCTTGACCCAGGAGTAGAACATAAAGATGGACAGGTGGACTTCATCA
GTGTGAATTGTTCTTCCGCAATTTGGGAGGGCATACTCTGGTGGGGACCC
TAGAATACGATGGTACTGTATTACTAGATGGACAGTCAGAAGTTTAGAGA
AAGTGATGACTTAGATAATGTAAAAATGACAAATATGACAAGGAAGATAG
TGGAAGAAGGGGTCAAAAGGGCAGTGGAGGGCTGGTGAGATGACTTAGTG
GGTTAAAGGGCTTGCTACCAAGCCTCACAAACTGAGTTCCATTTCTGGAC
CCTCGTTGTTGAAGCACACACTCGACTTATGCAAGGTATTCGCTTGCAGA
CCCCACCTCAAGACCCGCAACTAACCCACAATTCAATTAACTACATTAAT
AAATACACACACACACACACACACACACTAATTTAAAAAGGTAGTGGGCA
TAGAACTATGGGAATCTGGATAAATTGCTACTCAACCACATTTTCTCTAG
GAGCCTGAGCTATACTTTATTCACCAAAGTTATAAGAAACACTCTAAAGG
GAGAAATAAAAACTGTGTGTGGAACCCAATGGAATGTTATGACACTTCAA
GTGTCTAGGATGGGGTAACTGCCCATCTGAGAACATCTGTTTTAGAGTAA
TACTAACCAACCTCGCTGATTGGATTN
TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAATTATGGCACTTGCCATCAGGGCTGATGACT
GAGTTGGATTCCTCCCAGTCATGCAGCAGAAAGAGAAATGACTGGCACTC
AATGAACGGGCCTGTTTCAGAGCCATGTGCTGGCCATGGGAGCCATCAGC
CCAAACTATGGTGGTTATTTTTGTAGTGAAAACAGGACTTGAACCCAGGG
TCTTGAATGATAGAAAACATGTAGGGAGCTAGAAAGTAAGTGTTCCGAGT
AAAGAGCTATCAGCAAACAGGGTATGCTTGGGAACTAGTAGGATAGGATT
ATAGTTTATTGTTCCCACACCCAATGACTTGGGAAGATTCTAGAAAGAAG
CCCATTCTTCCCCCACAACAAAACCCACATCATTTAAGATCTTCATTAGA
TATATAGCAAAGATCTTTTGTGTGCCTCTGTGTTTGTGTGTGTGTGTGTG
TACATGTGCACATGCGTTGATGCGGAGATCAGAGAACACCAACTATCATT
CCCCAGGTGCTGTCTGCCATGTTTCTCGAGGCACTGTCTCTCATGACCTG
TAATTTACAAGCTGGAATTGGCAGACTGGCTAGCTGAGGGCCCAGGGGTC
CTTGTTTCTATCTCTCAGGCTGGAATTACATCTGTGTAACATAACATGCA
TTTTGATTTTTAAAAAATCTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_g21.b1 MSMg01no213_g21.b1 CHROMAT_FILE:
MSMg01no213_g21.b1 PHD_FILE: MSMg01no213_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:27 2005
         (237 letters)



>mm_chr1_63769378_63770014
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttgggagggcatactctggtggggaccctagaatacgatggtactgtattactagat 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aatttgggagggcatactctggtggggatcctagaatacgatggtactgtattactagat 260

                                                                       
Query: 61  ggacagtcagaagtttagagaaagtgatgacttagataatgtaaaaatgacaaatatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacagtcagaagtttagagaaagtgatgacttagataatgtaaaaatgacaaatatgac 320

                                                                       
Query: 121 aaggaagatagtggaagaaggggtcaaaagggcagtggagggctggtgagatgacttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaagatagtggaagaaggggtcaaaagggcagtggagggctggtgagatgacttagt 380

                                                                    
Query: 181 gggttaaagggcttgctaccaagcctcacaaactgagttccatttctggaccctcgt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggttaaagggcttgctaccaagcctcacaaactgagttccatttctggaccctcgt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no213_g21.g1 MSMg01no213_g21.g1 CHROMAT_FILE:
MSMg01no213_g21.g1 PHD_FILE: MSMg01no213_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:27 2005
         (286 letters)



>mm_chr1_63915616_63916301
          Length = 686

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaattatggcacttgccatcagggctgatgactgagttggattcctcccagtcatgcag 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||
Sbjct: 485 caaattatggcacttgccaccagggctgatgactgagttggattcctcagagtcatgcag 426

                                                                       
Query: 61  cagaaagagaaatgactggcactcaatgaacgggcctgtttcagagccatgtgctggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cagaaagagaaatgactggcactcaatgaacgggcctgtttcagagccatgtgctggcca 366

                                                                       
Query: 121 tgggagccatcagcccaaactatggtggttatttttgtagtgaaaacaggacttgaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgggagccatcagcccaaactatggtggttatttttgtagtgaaaacaggacttgaaccc 306

                                                                       
Query: 181 agggtcttgaatgatagaaaacatgtagggagctagaaagtaagtgttccgagtaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agggtcttgaatgatagaaaacatgtagggagctagaaagtaagtgttccgagtaaagag 246

                                                        
Query: 241 ctatcagcaaacagggtatgcttgggaactagtaggataggatta 285
           |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 245 ctatcagcaaacagggaatgcttgggaactagtaggataggatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)