BAC Information

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BAC

Clone NameMSMg01-213M16
Chromosome1 (Build37)
Map Location 30,194,699 - 30,194,932
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213M16.T7 (MSMg01no213_m16.b1)MSMg01-213M16.TJ (MSMg01no213_m16.g1)
ACCAG394671AG394672
length733733
length of high quality
(start - end)
318 (33 - 350)234 (115 - 348)
definitionCHROMAT_FILE: MSMg01no213_m16.b1 PHD_FILE: MSMg01no213_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:55 2005CHROMAT_FILE: MSMg01no213_m16.g1 PHD_FILE: MSMg01no213_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAGCACA
GGAATCTCAAATGGCTGAGAAGCACCTAAAGAAATGTTCAAAGCTTTTAG
TGATCAGAGAATTGCAATTCAAAATGACCCTGAGATTCCACCTTACACCT
ATCAAAATGGCTAAGATCAAAACCTCAGGTGACAACACATGTTGGCAAGG
ATGAGGAAAAAGAGGAACACTCCTCCATTGCTGGTAGAATTGCAAACTGG
TACAACCATTCTGGAAATAAATCTGGAGGTTCTTCAGGAAATTGGAAAGA
GATCTACCTGAAGACACAGCAATTCCACTCTTGGGAATATATCCAAAAGA
TGATCCTCTTTGACACCACCCGCACATGTTCTACTATGTTCATAGCAGCA
TTGTTGCGCCAGCCAGAAGATGAAAACGACCTAGGTATCTCAAGTCAGAA
AAAATGGATACAGAAAATGTGGTTCATTTATACAATGGAATATTACTCAT
CTATTAATAACAAGGACATACTGAGTTTTGCAGCCAAAACCAGGAACTAG
ATACTCTGTTGCTGCCAGAGAATGATCAGGTCAGTTGCTGGTAGAGGTAA
TTTTAGTATCATTGGACTATGTGGAAATAGACACTTGGCTTTGCATAATA
ATTCAGTTTCATGCTATGAATCCTCTGAATTCAGGCTTTCCTAAATTTCC
TGATTCTCAGCCCATTTAATTTTAAATTATGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTGTCTTCCACACTTGGATAGTGATTACACCAAAGTCGG
ATTCTTTGGAACCATATAATTTCCTGTCATGTCTGCAGACCCTGTCAGTA
GAGAGAAGTTGAAACGTGTTCCCTGAATGAATCAATGAAGACTAGAAGTG
AAAGCCTCATTAATGTCTGAGGTTGAATGCAGCTGGGCTGGCGCAGTCAT
AGAATTTGACTTTTCTTTGCAGTTTCTCATTAAGCCCACAGAATTCTTTG
TGGGTGTCATCTGAGCCTGGTGCGTAGGCAGTCACATGGACAAAGCCTCT
TATATTTTAACTGACCCTCCGCTGATGATAATTAGATTGTATTCTCAGAT
ATGATGCCACCACGCAGAATCTATAGGACCTGAATAACTTCCTTTCGCTT
AAAGGGGGAATATTATTGTTATTTGGAACCGAGCTCAGGATACTTAGTCT
TCTATCACAGGCCAAATATGATACCTATAATAAATAAAGTATTGCTGTTA
TATTTAATTCTATATTTCTTCCCTCAACTGAGAAAATTTGTATGGCAACG
AGGAAAGTTCTGATGTTTGTGCAGTTGCTGCTTTTACAATATTTCAGACG
TTTGTGTGTTCTCTCCTTTTTAATGCTGGAGTTGCTTAATGGAACGAATT
TTTATTCCTTTTCAGTTACACAGCTTTTGTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_m16.g1 MSMg01no213_m16.g1 CHROMAT_FILE:
MSMg01no213_m16.g1 PHD_FILE: MSMg01no213_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:55 2005
         (234 letters)



>mm_chr1_30194499_30195132
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataatttcctgtcatgtctgcagaccctgtcagtagagagaagttgaaacgtgttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 434 tataatttcctgtcatgtctgcagaccctgtcagtagagagaagttgaaacgcattccct 375

                                                                       
Query: 61  gaatgaatcaatgaagactagaagtgaaagcctcattaatgtctgaggttgaatgcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaatgaatcaatgaagactagaagtgaaagcctcattaatgtctgaggttgaatgcagct 315

                                                                       
Query: 121 gggctggcgcagtcatagaatttgacttttctttgcagtttctcattaagcccacagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gggctggcgcagtcatagaatttgacttttctttgcagtttctcattaagcccacagaat 255

                                                                 
Query: 181 tctttgtgggtgtcatctgagcctggtgcgtaggcagtcacatggacaaagcct 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tctttgtgggtgtcatctgagcctggtgcgtaggcagtcacatggacaaagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)