BAC Information

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BAC

Clone NameMSMg01-215M06
Chromosome1 (Build37)
Map Location 52,163,130 - 52,163,434
singlet/doubletsinglet
Overlap geneStat4
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, LOC100042634
Downstream geneStat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215M06.T7 (MSMg01no215_m06.b1)MSMg01-215M06.TJ (MSMg01no215_m06.g1)
ACCAG395896AG395897
length745968
length of high quality
(start - end)
299 (381 - 679)---
definitionCHROMAT_FILE: MSMg01no215_m06.b1 PHD_FILE: MSMg01no215_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:31 2005CHROMAT_FILE: MSMg01no215_m06.g1 PHD_FILE: MSMg01no215_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCATCTAATTATCGAAACGGAAATGATTGTTAAGGAAACCATCTTGCAA
ATAAATTGCTGTTTTGATAGCCTAAACACTCTTTTGTCTACTAAACAATC
TGTAATCTTTCTACCAATTAACTAAGGATTCATTAAAGTAATTAGGGCTG
ATCAGCCCGAAATAAAAGGCATAATTTAAGTAGATTAAAAACTGTGTTAA
GAAGTCCACTCACAGGGCAGGCAAAGTGGCTCAGCAAGAAAAAGCACAAG
ACACACACACACACACACACATACACTAATTAAACAAATTCATCAGACTA
AAAATAATATGATAATGGATGCCAAACATAGCAAAAGTTCAGTTATGTAT
AAATGGCTTGGTGAGCCAAAGTTAGCCAGCCCTGGGTTAAGCCATCCAAG
GCAGGCTTGGACTTTCCATCCCTGGAGTCTTGAAGAACTGAATACCATTG
GACCTGTGGCCAGATGTCACTCTCCTGGGCATCTGGACCCCTCCAAGGGA
TTCTAATGAATGTTCACCTTATGTGAATTGGGGGTGTTGAACCCTTTAAC
AGCATTGGGGGATGGAAACAAATAGAACACATCCCAAGTAACATATAATG
TTACAATGTATTATATGTTTTATATTGTTCTAGTGCGCTATAATGTATAT
ATGACATACACCTAAATATTGGATTGTGACTCAGATCTAATAAAN
NNNNCCCCGGGGTTGTTTTACTCTTNCNCCCAAGCGTNNNGGGGGATGAA
GTGGGAGGGTTGTGGAGTTTGTTTTCTAAAACAAGAGGATTAAGGAAATT
TCTCGGAGTTTGGTAAAAAGGAAAACTATTTTGGAATATATGTTGTGTTT
TTGGTTTCTTTGGATAATTTTGTTTTAATGGGATATAAGGTATATTTAAA
TATTATGGGTGTAAAAAATGGGACGGTTGTTACTATTATTAAAGAGAGTG
TGTGTATTTTATGTTGAGAGGGGTTTGTGGATTTTGTTAGGTGTGAGTGT
TTTTTTTTTTTTTTTATGTGGGAGAGGTGTTGTTTTTGTAAATTTTTATT
TGCACGCGTAGATAAGTGAGGAGGAGACGGAGGAAACCATTTTTTTTTTT
TTTTTGCGGGATAGAGGTTGAGTGATGGAGGAGAGAAGAGAAAGTTTTTT
TTTTTTTTTGCCCCCCCCCCACCCCCCCCCGGGGAAGAGGGTAAATAGTT
TGGATGTGGTTTTGGGTTTNNGTCGTCCCCCACTTTTTTATNTNTNTTAA
ATTTTTGGGGGTTGCTGGGGTGGGTGTTTGATTTATTTTTATTCGAATTA
GGGTGGGGTGTTGGGTGAATTAATTTATGTGTATGTTGGAGTTTTTGGTA
ATGTGGATGCGTGGTTTTTTTTGTTGGTTGTGAGTTAATTAAGGGGTGTT
TTTATGATGGTTAGGTGTGTTAGGTGTAGAGTTGTGGATGTTCGATAGTT
TGTTTAAGTTGGTTGAGTGGGTGTTTGTATATATGGTTTGTTGTTCTGTG
GTTGTATATAGGGTTTTTGTGTGATGCGGCCTGGTGTGGTGTGTTTTTTT
TGTATTTGGATGCGGACTGTTTAAATTTTGTGGAGTTGTGTGTGTGTGAT
TTTTATTGTTTTGTGTTTTAATTTGGATTTGCGATTTAGAGTATTTTTGG
TTAGAAGATATAAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_m06.b1 MSMg01no215_m06.b1 CHROMAT_FILE:
MSMg01no215_m06.b1 PHD_FILE: MSMg01no215_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:31 2005
         (299 letters)



>mm_chr1_52162930_52163634
          Length = 705

 Score =  513 bits (265), Expect = e-150
 Identities = 293/305 (96%), Gaps = 6/305 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaaagttcagttatgtataaatggcttggtgagccaaagttagccagccctgggttaa 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 505 gcaaaagttcagttatgtataaatggcttggtgagttaaagttagccagccctgggttaa 446

                                                                       
Query: 61  gccatccaaggcaggcttggactttccatccctggagtcttgaagaactgaataccattg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 gccatccaaggcaggcttggactttccatctctggagtcttgaagaactgaataccattg 386

                                                                       
Query: 121 gacctgtggccagatgtcactctcctgggcatctggacccctccaagggattctaatgaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 gacctgtggccagatgtcactctcctgggcatctggacccctccaagggattctgatgaa 326

                                                                       
Query: 181 tgttcaccttatgtgaattgggggtgttgaaccctttaacagcattgggggatggaaaca 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 tgttcaccttatgtgaattgggggtgtcgaaccctttaacagcattgggggatggaaaca 266

                                                                       
Query: 241 aatagaacacatcccaagtaaca-----tataatgttacaatgtattatatgttttatat 295
           |||||||||||||||||||||||     ||||||||||||||||||||||||| ||||||
Sbjct: 265 aatagaacacatcccaagtaacatatattataatgttacaatgtattatatgtgttatat 206

                
Query: 296 -tgtt 299
            ||||
Sbjct: 205 atgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 705
Length adjustment: 9
Effective length of query: 290
Effective length of database: 696
Effective search space:   201840
Effective search space used:   201840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)