Query= MSMg01no215_p19.b1 MSMg01no215_p19.b1 CHROMAT_FILE:
MSMg01no215_p19.b1 PHD_FILE: MSMg01no215_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:47 2005
(625 letters)
>mm_chr1_54234919_54235943
Length = 1025
Score = 1091 bits (564), Expect = 0.0
Identities = 586/594 (98%), Gaps = 2/594 (0%)
Strand = Plus / Minus
Query: 30 attgctgagattgttcaagatcttccgcgattcagtctgaattctaggattggtttctat 89
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1025 attgctgagattgttcaagatcttctgcgattcagtctgaattctaggattggtttctat 966
Query: 90 ttctgtgaagaatgctactaggggctaggtttagtggctcctgcctctatgtgaacgctt 149
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 965 ttctgtgaagaatgctactaggggctaggtttagtggctcctgcctctatatgaacgcgt 906
Query: 150 gggagttggtgaaagatgagggcaaccctgggcttcacagtgagttccaagctgcctttg 209
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 905 gggagttggtgaaagatgagggcaaccctgggctacacagtgagttccaagctgcctttg 846
Query: 210 gttttaaagagtctcaaaaacaaagcacaacaaacaagcaaaccaacaacaaatcccaaa 269
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 g--ttaaagagtctcaaaaacaaagcacaacaaacaagcaaaccaacaacaaatcccaaa 788
Query: 270 acaaaacactctcccagtccccaacccccaaaatataaatagaggcacaagtagcattgg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 acaaaacactctcccagtccccaacccccaaaatataaatagaggcacaagtagcattgg 728
Query: 330 atctttccgaattgtatggaatctgcagaacttcttgggtcctgtagacatttaaattca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atctttccgaattgtatggaatctgcagaacttcttgggtcctgtagacatttaaattca 668
Query: 390 ttcttttagtctgcaattgagagttgtctttgaaacatgtcttcttcagttttcctcttt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ttcttttagtctgcaattgagagttgtctttgaaacatgtcttcttcagttttcctcttt 608
Query: 450 aatgttttacaatcatcagtgtgaaaaccctttatcttgttagtcaaatttattcataca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aatgttttacaatcatcagtgtgaaaaccctttatcttgttagtcaaatttattcataca 548
Query: 510 tacttcacatttttgttcttattgtaaagtctgtgagtgtatataatcatgtcctctttg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tacttcacatttttgttcttattgtaaagtctgtgagtgtatataatcatgtcctctttg 488
Query: 570 agcagagataattttactcttatttctattcaggatcctctccgctccccctct 623
||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 487 agcagagataattttactcttatttctatgcgggatcctctccgctccccctct 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_p19.g1 MSMg01no215_p19.g1 CHROMAT_FILE:
MSMg01no215_p19.g1 PHD_FILE: MSMg01no215_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:47 2005
(454 letters)
>mm_chr1_54172127_54172980
Length = 854
Score = 756 bits (391), Expect = 0.0
Identities = 440/475 (92%), Gaps = 32/475 (6%)
Strand = Plus / Plus
Query: 1 caccaatcctcgaaagaccacacaaccctgaatggaaagtcagaggccggacaaccacta 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 caccaatcctcgaaagaccacacaaccctgaatggaaagtcagaggatggacaaccacta 260
Query: 61 catggaaagattctgaatgctgatgaggcacacagtatctgagcatcttgtgggaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggaaagattctgaatgctgatgaggcacacagtatctgagcatcttgtgggaaagat 320
Query: 121 aacgagataaggcacagagctctgcatcctaggcttgtcccccctgcttgatacacctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgagataaggcacagagctctgcatcctaggcttgtcccccctgcttgatacacctgc 380
Query: 181 tttacagacagatgatctccatgactcagtcatgtgggtatcaacttaaggactgctact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tttacagacagatgatctccatgactcagtcatgtgggtatcaacttaaggaatgctact 440
Query: 241 atcaccagacacttgattatgtgtgtccgtgtccgtgtgt-------------------- 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaccagacacttgattatgtgtgtccgtgtccgtgtgtccgtgtgtgtgtgtgtgtgt 500
Query: 281 gtgtgtgtgtgtgtgtgtgtgtgaccagacacttgattatgtgtgtccgtgtgtgtgtgt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgtgtgtgtgtgtgtgtgtgaccagacacttgattatgtgtgtccgtgtgtgtgtgt 560
Query: 341 gtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgcctctctatgtgtgtctctctgtgtgt 400
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgtg----------tgtgtgtgtgtgtgtgcctctctatgtgtgtctctctgtgtgt 610
Query: 401 gtctgtgttgtg-gctctctgtgtgtgtgcctctgtctatatttctataaacatt 454
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtctgtgttgtgtg-tctctgtgtgtgtgcctctgtctatatttctataaacatt 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 140
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
