BAC Information

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BAC

Clone NameMSMg01-216A11
Chromosome1 (Build37)
Map Location 57,659,521 - 57,659,843
singlet/doubletsinglet
Overlap genenone
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Downstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216A11.T7 (MSMg01no216_a11.b1)MSMg01-216A11.TJ (MSMg01no216_a11.g1)
ACCAG396064AG396065
length743774
length of high quality
(start - end)
323 (388 - 710)182 (72 - 253)
definitionCHROMAT_FILE: MSMg01no216_a11.b1 PHD_FILE: MSMg01no216_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:51 2005CHROMAT_FILE: MSMg01no216_a11.g1 PHD_FILE: MSMg01no216_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGT
TCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATT
CCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATATCCCATTCGGTAAGAACGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCACATG
CCCCTCAACAGAGGAATGGATACAAAAAATGTGAATAACTTTTCTAATGA
ATAAACACAATATCCTACCCAGATGTAAGTTTGTTGTCTGAGCTGAGGGG
GCTGACTGTTTAGGTCGGCAATATGTAGACTTTGTGGTAATTCTCCAGTA
ATCTGAAAGGTATCACTTCTCAGCTGCACTATATCACTAGGTGTACTGGC
TAGTTTTGTGTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCT
TCCCTTGAGGAAATGCCTCCATGAGATCCAGCTATAAGGCATT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTTCGAATTCTTTTTTTTCCCATTTCTAGAATCTTT
CTGGTAGAATTTTAGGGTTCTTTAACCTGTTCTATTCTGTCATCTACAAT
TAGGGATGGTTTGACTTATTGTCCTATTAGTATCCCTTTAATTTCCTTCT
CCAGCTAGCACTTGAAATGCAGTATTAAAAAGGAGTGGATCTGATAGGAN
GNNTGNTTTNNNTTCNTTATTTTTGGATNTGTTCTCTTTTTTTGTTCNNT
TNNTTGGNNTNTNNNNTNTNTTTTTTTTTTTTTNTCNTTTTTCGTTCCCN
CCCCCCTCTTATTTTTTTTTTCCCCCCCCCCCCGCGCCTGCTTGGTTTTT
GTGTTTCTCTTTCTTCCCCCCCCTCTTTAAAAAAAACTTTTTGTGGGTTG
GCCGTTGTTCTTTTCAGATTTAGTGTATCCATTATATTGCTTTTACAACT
TTGTTCTTTCGATATTCGGGCTCTTTATTTGACTTTGTTTGTCTTGCCTT
GTCGAGTTATCACTACGCTATCACGGCTGTCTCAGCTTACGTGTTTTTTT
TCTTTTTCTTTCCCCCCTGTGTGTGCCTACTCATTCTTAGCTTCAGTTCG
ATGTTATTATAGTAGTGTTCTTTTGAGTCTCCTCCGTCGTCTAACCGCCA
TTCTCGAATCGTTTGCTGGCNTGCTATTTATTCTACTCTCTTTATACCTC
TCCATCCTGATTATCTACGGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_a11.b1 MSMg01no216_a11.b1 CHROMAT_FILE:
MSMg01no216_a11.b1 PHD_FILE: MSMg01no216_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:51 2005
         (323 letters)



>mm_chr1_57659294_57660016
          Length = 723

 Score =  588 bits (304), Expect = e-172
 Identities = 319/324 (98%), Gaps = 2/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 550 atgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccag 491

                                                                       
Query: 61  atgcccctcaacagaggaatggatacaaaaa-atgtgaataacttttctaatgaataaac 119
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 490 atgcccctcaacagaggaatggata-aaaaatatgtgaataacttttctaatgaataaac 432

                                                                       
Query: 120 acaatatcctacccagatgtaagtttgttgtctgagctgagggggctgactgtttaggtc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acaatatcctacccagatgtaagtttgttgtctgagctgagggggctgactgtttaggtc 372

                                                                       
Query: 180 ggcaatatgtagactttgtggtaattctccagtaatctgaaaggtatcacttctcagctg 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 371 ggcaatatgtagactttgtggtaattctccagtaatctgaaaggtatcccttctcagctg 312

                                                                       
Query: 240 cactatatcactaggtgtactggctagttttgtgtcaacttgacacagctggagttacca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cactatatcactaggtgtactggctagttttgtgtcaacttgacacagctggagttacca 252

                                   
Query: 300 cagagaaaggagcttcccttgagg 323
           ||||||||||||||||| ||||||
Sbjct: 251 cagagaaaggagcttccattgagg 228


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)