Query= MSMg01no216_k16.b1 MSMg01no216_k16.b1 CHROMAT_FILE:
MSMg01no216_k16.b1 PHD_FILE: MSMg01no216_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:45 2005
(247 letters)
>mm_chr1_6257655_6258297
Length = 643
Score = 458 bits (237), Expect = e-133
Identities = 243/247 (98%), Gaps = 4/247 (1%)
Strand = Plus / Plus
Query: 1 cctctctattttctttttctgtttgtttgtttgttttgtgacaggatatctctagttggc 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cctctctattttctttttctgtttgtttgttt----tgtgacaggatatctctagttggc 256
Query: 61 aaggaatgcatagtcctaccttcagagtgtgatgattccagctaggcatatgccatcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaggaatgcatagtcctaccttcagagtgtgatgattccagctaggcatatgccatcatt 316
Query: 121 tattgccagcctctgttttattcctttgcctttacacaaactaaaattaggtgttttata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tattgccagcctctgttttattcctttgcctttacacaaactaaaattaggtgttttata 376
Query: 181 ctggtagtattactaattaagaaggctttaaagaagagtggcctattccaaatgacatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctggtagtattactaattaagaaggctttaaagaagagtggcctattccaaatgacatca 436
Query: 241 cctaata 247
|||||||
Sbjct: 437 cctaata 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 643
Length adjustment: 9
Effective length of query: 238
Effective length of database: 634
Effective search space: 150892
Effective search space used: 150892
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no216_k16.g1 MSMg01no216_k16.g1 CHROMAT_FILE:
MSMg01no216_k16.g1 PHD_FILE: MSMg01no216_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:45 2005
(624 letters)
>mm_chr1_6390236_6391259
Length = 1024
Score = 629 bits (325), Expect = 0.0
Identities = 349/357 (97%)
Strand = Plus / Minus
Query: 1 acatctgattctctgatctaaacatgctttcaaatgtttgttttagaacattgagtgaat 60
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 357 acatctgattctctgatctaaacatgctttcaaatgtttgttttaaaaaattgagtgaat 298
Query: 61 ctgtggctttattacgaacgtcccatcctgacaatgctcaaatgtgactgaggcatgtga 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctgtggctttattacaaacgtcccatcctgacaatgctcaaatgtgactgaggcatgtga 238
Query: 121 catgttacaagttaagaagctgttctgtttgcactgagaaactgaattctagaaagggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 catgttacaagttaagaagctgttctgtttgcactgagaaactgaattctagaaagggtg 178
Query: 181 tgtaacctgtccaagacaacctagctagaaagtggcaaactctgtcctgcctttagagcc 240
||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 177 tgtaagctgtccaagactacctagccagaaagtgacaaactctgtcctgcctttagagcc 118
Query: 241 tttagaagtgtttctagccacaattctatacttcttcctctcagtatagcttcttgcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tttagaagtgtttctagccacaattctatacttcttcctctcagtatagcttcttgcagg 58
Query: 301 ctacatactaatcattgatatataatgcaatataaccccacatcttaactgtttatg 357
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 57 ctacatactaatcattgatatataatgcaatataaccccacatcttagctgtttatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
