CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTACCTCACCTCGAATCCAGAGAACCTGTTTATTCTTGGTGGTT
TCATCTGTACAGCCTTCATAGCCTCTGAATATTTTAAACTCTTCCTGTTA
GAGCATCTGCATGTGTGTATACATGAATGGGGAAGAGAGAAGGCAATTTG
ATTCCATAAAAGTTCTGTATCATGTAGTGTTTCATTGCTTTCAAATACCC
ATTGGCTTAATTTCACTAAACATTGTTTACCTCCTAAGAAGAGCCACTCC
TGGGCTCATGGTAACCAACAGAGAGTGCACAATAATTAACACTAGTCATT
ATTTCCAATCTCATTTGTGTAGTAACCCCCCCCCCCAGATTATGATTATG
TATTGATATGAAAATATGGACAAAATGTAGACTTCTGAATGAGTAATGTT
AAACTATAAGAAATAGCAAATTTAAGATGTCAATCTGTAACCTTTACAAA
CCTTTGTTTGTTGTTATACTATTACAGTCTAGAACTTACTTTTAATTTTT
TTCTGACTCTAAAACATGGAGAAATTCCATGCTAATGCTATTAACATTCT
AAAGGTAAATGCTGTGTGTAACAGCTGGAATAAATAAATGAAAGACAGAT
AACAAATATTGTATGATCATATTCAAAACTAAGTAAGGTGAAAGTGATTT
GTTTATTTATTTGTTGATTGGTTGGATTGGTTGTTTGATCACCN

CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAAAAAACTTCAGATGTAAGGAAGAAAAACTTC
TGATATTTGCAAGAAATCTTATACCACTTAAAAACACCATGCAAAGGCAG
GTAACGCAGACTTGTAAATGCAAACACCACATGTTCTCTCTCTTGTTTTT
CGACTATAACCCCTCATTTTTACATGTGCAGAAAGGGATCCAGGAAAAAG
CAGTGTTAGTAAAGGAGGTTGGGGAGCATGTTAGAGACCCTGTGACATTA
AAATGGAAAGGGGATCAGTGTTTGGTGAATATACCTGGAGGGGCGGGGGT
CGAAAGTGGATATATTATTTTCACCCCCTCTGTACGATACTCCTGTCAAT
CACATTTAGAAATTCCAGTCACTCTCATCAATGAAAGAACGTCCTTTTCA
ATAGCCTGAACTAGATATCCAATCTGTGTGTGCCTAAAACAGAACCAAGA
TGTCAAACATAGAAAAAGCTTTCTGAAGAAGCACGCCTGATTGTGGGTGC
TTCGGTCTGCGTTTGCTGCACATCTGTAGGGCAAAGCTGCAGTTGCAGAA
TGTGGGTGAGTCCTGAGAAACGAAAGCAGGGGAGAGAGCAGAGTGAACAC
TCTAACTTCCATTCAGACAATCCCACTGGGAGAAAACAGTTTAAAGACCT
ATATTCCCTAGAAGAAAAATCTGCTTTCTATAGATTTCN

Query= MSMg01no216_m07.b1 MSMg01no216_m07.b1 CHROMAT_FILE:
MSMg01no216_m07.b1 PHD_FILE: MSMg01no216_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:54 2005
         (326 letters)



>mm_chr1_19749401_19750126
          Length = 726

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcctacctcacctcgaatccagagaacctgtttattcttggtggtttcatctg 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 526 ggaattctcctacctcacctcgaatccagagaacctgtttattcttggtggtttcacctg 467

                                                                       
Query: 64  tacagccttcatagcctctgaatattttaaactcttcctgttagagcatctgcatgtgtg 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 466 tacagccttcatagcctctgaatcttttaaactcttcctgttagagcatctgcatgtgtg 407

                                                                       
Query: 124 tatacatgaatggggaagagagaaggcaatttgattccataaaagttctgtatcatgtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tatacatgaatggggaagagagaaggcaatttgattccataaaagttctgtatcatgtag 347

                                                                       
Query: 184 tgtttcattgctttcaaatacccattggcttaatttcactaaacattgtttacctcctaa 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 346 tgtttcattgctttcaaatacccattgacttaatttcactaaacattgtttacctcctaa 287

                                                                       
Query: 244 gaagagccactcctgggctcatggtaaccaacagagagtgcacaataattaacactagtc 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 286 gaagagccactcctgggctcatggtaaccaacagagagtgcacaataattaacactagac 227

                                  
Query: 304 attatttccaatctcatttgtgt 326
           |||||||||||||||||||||||
Sbjct: 226 attatttccaatctcatttgtgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no216_m07.g1 MSMg01no216_m07.g1 CHROMAT_FILE:
MSMg01no216_m07.g1 PHD_FILE: MSMg01no216_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:54 2005
         (194 letters)



>mm_chr1_19583199_19583792
          Length = 594

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaaacaccatgcaaaggcaggtaacgcagacttgtaaatgcaaacaccacatgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaacaccatgcaaaggcaggtaacgcagacttgtaaatgcaaacaccacatgttct 260

                                                                       
Query: 61  ctctcttgtttttcgactataacccctcatttttacatgtgcagaaagggatccaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcttgtttttcgactataacccctcatttttacatgtgcagaaagggatccaggaaa 320

                                                                       
Query: 121 aagcagtgttagtaaaggaggttggggagcatgttagagaccctgtgacattaaaatgga 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcagtggtagtaaaggaggttggggagcatgttagagaccctgtgacattaaaatgga 380

                        
Query: 181 aaggggatcagtg 193
           |||||||||||||
Sbjct: 381 aaggggatcagtg 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)