Query= MSMg01no217_e05.b1 MSMg01no217_e05.b1 CHROMAT_FILE:
MSMg01no217_e05.b1 PHD_FILE: MSMg01no217_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:41 2005
(424 letters)
>mm_chr1_178139621_178140447
Length = 827
Score = 692 bits (358), Expect = 0.0
Identities = 396/414 (95%), Gaps = 11/414 (2%)
Strand = Plus / Plus
Query: 18 gaattcttttgtcttgtgacctactggactggtgcagtatccacagcacaccctctgtcc 77
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcttttgtctcgtgacctaatggactggtgcagtatccacagcacaccctctgtcc 277
Query: 78 atgcggcacttccatctgatgaagatatggatcaagtccaaatttgtttattttcagctt 137
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atgcggtacttccatctgatgaagatatggatcaagtccaaatttgtttattttcagctt 337
Query: 138 catgagcaagccctccctaaaatactgcaaaaa---aaataaataagagagacatttgct 194
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 338 catgagcaagccctccctaaaatactgcaaaaaaataaataaataagagagacatttgct 397
Query: 195 ctcattatagcactggcgtatgtgctataatttttaatgctcttggcacgatctttaaga 254
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctcattatagcactggcatatgtgctataatttttaatgctcttggcacgatctttaaga 457
Query: 255 agaaactcagagccaaacaactatctatgaagtgtcaccagacactaaagttacaggaga 314
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 458 agaaactcagagccaaacaactatctatgaagtgtcaccagatactaaagttacaggaga 517
Query: 315 tgtgaccttggacttgtggccactggaaggctaagaaatgaatctgtgttgcttataaaa 374
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 518 tgtgaccttggacttgtggccactggaaggctaagaaatgaatctgtgtttcttataaaa 577
Query: 375 tttt----ctatgaaaaatattttgttgtaataatctgaagagactcaggcaaa 424
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ----gacccaatgaaaaatattttgttgtaataatctgaagagactcaggcaaa 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 827
Length adjustment: 9
Effective length of query: 415
Effective length of database: 818
Effective search space: 339470
Effective search space used: 339470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no217_e05.g1 MSMg01no217_e05.g1 CHROMAT_FILE:
MSMg01no217_e05.g1 PHD_FILE: MSMg01no217_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:41 2005
(331 letters)
>mm_chr1_178306571_178307301
Length = 731
Score = 638 bits (330), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Minus
Query: 2 aaccctgatccaaaaatgatcttactcagtttgcacagagacaaagggagaaaacgtagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaccctgatccaaaaatgatcttactcagtttgcacagagacaaagggagaaaacgtagg 472
Query: 62 gttcaggaaaagtctttcaagaggccaagattctctgcgtgggccaccgacaaacagtgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gttcaggaaaagtctttcaagaggccaagattctctgcgtgggccaccgacaaacagtgt 412
Query: 122 gatttgggaatgtcacaccttaagtcccctcaaatcatgccttaggtttagagggtaaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gatttgggaatgtcacaccttaagtcccctcaaatcatgccttaggtttagagggtaaga 352
Query: 182 ccctgtaaagatgaaacttatttaagaaggccatgcattaatcatgtgctataacactat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccctgtaaagatgaaacttatttaagaaggccatgcattaatcatgtgctataacactat 292
Query: 242 ccgatgcgtcactgacctatctctaggggagaaatctagaaaactctcagaagcctacct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ccgatgcgtcactgacctatctctaggggagaaatctagaaaactctcagaagcctacct 232
Query: 302 acttgggtctgtaactttctgttccagaag 331
||||||||||||||||||||||||||||||
Sbjct: 231 acttgggtctgtaactttctgttccagaag 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
