BAC Information

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BAC

Clone NameMSMg01-217G05
Chromosome1 (Build37)
Map Location 60,809,807 - 60,810,177
singlet/doubletsinglet
Overlap geneCd28
Upstream geneB430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4
Downstream geneLOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217G05.T7 (MSMg01no217_g05.b1)MSMg01-217G05.TJ (MSMg01no217_g05.g1)
ACCAG396930AG396931
length1,3001,386
length of high quality
(start - end)
462 (29 - 490)371 (72 - 442)
definitionCHROMAT_FILE: MSMg01no217_g05.b1 PHD_FILE: MSMg01no217_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:53 2005CHROMAT_FILE: MSMg01no217_g05.g1 PHD_FILE: MSMg01no217_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAGCACTGCGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATCAG
CAGCTTCACCATGTGGCTCTGGCTTTAGAAGAAAGGATACAAGAAAGGGG
TTGTACAATCTCCTTCCAGGGAAAGTTGCTGAGGCCAGGCATGTGTCAGG
TATGTCCTTACATATTGCATGAAGCTGTGAACAGATAACTGCCAAGAAAA
GCTACACACCTGTATGGAGTCAGCCCAACAGACAGGAGTACTGCAGTCAT
CAAAGGAGTTAGAGATTCAAAGAACCCTTTGATATCAGACAAGATGCAGA
ATTTAGAGTTTGCTTTGCTGGTTTCTGGTGTTGCTTAGGTCCAGTATTTC
CTCGTTGTGTTCCCTTTCCTCCTTTTTAGAATGGAAATAGTTATTCTGTG
TCTTTGCTTGTTAGAAGTATGTGATCTTCATTTTGATTTTGTTTAACAAG
GTTTTTTTTCCCCCCCCCCCTCTCAAAAGAGACTTTAATCAAAAAAAAGT
TAGACAGTATTGAGGAGCCTGTGATACTTTTTTAAGTTGGACTGAATGCA
TCTTTTTTTTTTAACCATGGTATGGCTATAAGCCTATGGAGGCCAAGGAG
TGGAATATAATGGTCTGAATAAGAATACATTCCCATAGGCTCATATTTTT
GAATGTTTAGTCATTAGTAGTGACACTGTTTGGAAGGGTTCGGCTAGAAA
GGTGTGGCCTTGTTGGAAGAAATTCATCACTGTTGGGCTGGGGGATGGTT
TGAGGTTTCAAAAGCCCTTCCGAGGCTTATTATTTCTCTGCCTGCTGCCT
GTGGATCAAGATGTAACTTTTTCAAGTTATTTCTCTTATATCTTGTCTGC
CTTCATTGTCTCCATGCTCTTCTTCTTGATGATCAATTGTATAAATCCTC
TGTAACTGTTATTATGCTTTCTATTTACTTGTTCTTTTTTCTACTTGTCT
TGGCTCTTTTCTCCTTTACTTTCTTTATATCTCTTTTTATATTCCTTTTT
TTTTATTTAATTTTTTGTATCACTCTTTATCTTTTGTTCCTCTTTATTAA
ATTCTTAATAACTTTTTTTTTTTATTCCTTTCCTTCTTTTCTATTATTAT
TTTTATTAATTTTTTTTCCATTACAAAATCCTTTTTTTATATCTTCTTCT
CATTTTTCTTATCTATATTTCCTCTTTTTCATCACTCTCCTTCTCTCACT
TCTTTATTATTTCCCATTTATTTTCCTCTATCCCTTATCTTCTTTTCTTC
TCATCTCATATCATTGCTCTTCTATGCTATGATATTTATCTACCATCACC

NNTTTTCAGTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTATTCAAAACATGTAAGAAGATAGCAAA
ACATTTATCTTATCTGTGCTGCTCTCTGCACATATGAAACATTTGAACAA
GCTGCTCAGGGCTCCTGTGACATGCACAGACTCTTCTGGGTAGGTGTCAG
AGCCTGGAATTCTGGAAATAATGACTATTTTAGACCTGAACTTTACGGTG
GAAAATAAGAGTCAACAAAGGCAGTATGGCTTCCCCAACCCTGCAGCCAT
TTAGAAGCACATAGGCACCTAAGATTCTAAACAACAGATATAAAAGATTT
CAGAGATAACTGGCTTGCAATTCTCTACATATATGCATCTATGTATATAT
GTATGTTTGTATATATATGTGTGTGTATGTATGTATGTATATATGNNNNN
NTTTTTTTTTTTTCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNAAAAAAA
AAAAAAGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_g05.g1 MSMg01no217_g05.g1 CHROMAT_FILE:
MSMg01no217_g05.g1 PHD_FILE: MSMg01no217_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:54 2005
         (371 letters)



>mm_chr1_60809666_60810436
          Length = 771

 Score =  679 bits (351), Expect = 0.0
 Identities = 366/371 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattcaaaacatgtaagaagatagcaaaacatttatcttatctgtgctgctctctgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 512 ctattcaaaacatgtaagaagatagcaaaacatttatcttatctgtgctgctctctgtaa 453

                                                                       
Query: 61  atatgaaacatttgaacaagctgctcagggctcctgtgacatgcacagactcttctgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atatgaaacatttgaacaagctgctcagggctcctgtgacatgcacagactcttctgggt 393

                                                                       
Query: 121 aggtgtcagagcctggaattctggaaataatgactattttagacctgaactttacggtgg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 392 aggtgtcagagcctggaattctggaaataatgactgttttagacctgaactttacggtgg 333

                                                                       
Query: 181 aaaataagagtcaacaaaggcagtatggcttccccaaccctgcagccatttagaagcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaaataagagtcaacaaaggcagtatggcttccccaaccctgcagccatttagaagcaca 273

                                                                       
Query: 241 taggcacctaagattctaaacaacagatataaaagatttcagagataactggcttgcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taggcacctaagattctaaacaacagatataaaagatttcagagataactggcttgcaat 213

                                                                       
Query: 301 tctctacatatatgcatctatgtatatatgtatgtttgtatatatatgtgtgtgtatgta 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 212 tctctacatatatgcatctatgtatatatgtatgtatgtatatatatgtgtgtgtatgta 153

                      
Query: 361 tgtatgtatat 371
           || ||||||||
Sbjct: 152 tgcatgtatat 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)