BAC Information

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BAC

Clone NameMSMg01-231C14
Chromosome1 (Build37)
Map Location 23,578,742 - 23,656,991
singlet/doubletdoublet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231C14.T7 (MSMg01no231_c14.b1)MSMg01-231C14.TJ (MSMg01no231_c14.g1)
ACCAG398067AG398068
length745748
length of high quality
(start - end)
669 (45 - 713)303 (77 - 379)
definitionCHROMAT_FILE: MSMg01no231_c14.b1 PHD_FILE: MSMg01no231_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:23 2005CHROMAT_FILE: MSMg01no231_c14.g1 PHD_FILE: MSMg01no231_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,656,326 - 23,656,991)(23,578,742 - 23,579,043)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGATTCTCCCTTTAGCACTTCCGGATTCCCACAAACGCTCTTTC
CTCCTTCCTTTGTTCTTCCCCTGACTTGGAATATTCACTGGGCTGAAGCT
TCCTCTGTGTGTAAAGGCAGCTCACATGCTATAGTTAAATGTGATGCCAG
ACCTGAGATTGGAAGTAGACATCGCTGCTCAGTGCCTCCAGAATCCACAC
AGTTTCTTTGTGTTCATTCAAGAAGAAATGCTGCTCCTTGCTGAAGAGAT
GGCAGTTCAGGGGTGGGGAGGATAATAGGTGTTCTGTTTTAGGGCTCTTC
TCTAGCCTGCTGGTGAAGCTGACTGTGATGGGGTTGAAGTTTCTCGAGAG
ACTGAGGACTTCCTCTCACTCAGACACATTCCCTAGGAGAGAAGACAGAT
GGTTGTTCGTGGGGAGGAAGAGGAACAGGGAGATAAACACACTTATTCTC
AAGAATTATGATAAAAAGTGCATTTACCCAAGGGCTTTGGCTTTAGCCAC
ACTGAAATTATTGACCTCCAGCTATTAGAAAGTAAAATAGCCAGTCAATT
TTCCTCAGCTTGAATCTTAATCTTTCATATGACACTATATTGTAACAAAT
GACAGTGGAAAGGACTCAACTTTGTGTCTGGCTTATTGTATATTTATTAC
CCGCAAATAATTGGTGAAATGTACTCCCACCCCCTCAACTGAAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGAAAGACTTCAGACTCAAAG
GCTGGAGTCAGAGAGAGAGGGGAGTGTGGACAGGCTGTCATTCTCACAGA
TAGATCGAGAAAAAAGGAGAGCCCCTGGGTCTTCCATAAGGAGCAAAGAT
CTCTCTGACCCAACTCCCGCTCTTCCACATCATAGCTTTCCTCTGTCCTG
AGGCATTGTGGGTAACACTGAAGACCCATTCAGATGCATATTGTCTGTTC
TATCTCTTTTCTAATTTCTATTCATCTCTTGAGCTTGGACTATAAACCCA
TGTCTGAGAACCTCATTTATTCTTATGGCCTCCGAAATGCTGTGTACCTA
GCATCTAAATGTGAGGTAGACGCGTGTAAAGCTAAATCATTTCCAGAGTG
CAGTCCCTGGTATTCGTAATTCCAGTGCTATGGAGAAATGAATAAAATGT
TTCGTGTCAGAGGACAGATTTGTCTTTCTAGAAAGCGTTCCTTATCGGAG
CCGTGGGCTTACTTTTCTAGCGTCAGATAATAATGACCTGCTCTAGTCAT
GGAGGCCAGACAACCCAAAACTCTCTTCTTATTTATCTTACCCTACAATA
AATACTGCTGCCCATCAGGCCATTCCTGTCTATTCTCTGCCTGGAAATAT
AAGACAAAAAAGAAAAAAAATGCCCGAAGGAAGCCAGCAGCCCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_c14.b1 MSMg01no231_c14.b1 CHROMAT_FILE:
MSMg01no231_c14.b1 PHD_FILE: MSMg01no231_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:23 2005
         (669 letters)



>mm_chr1_23656123_23657191
          Length = 1069

 Score = 1218 bits (630), Expect = 0.0
 Identities = 657/666 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgattctccctttagcacttccggattcccacaaacgctctttcctccttc 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 869 ggaattctgtgattctccctttagcacttccggattcccacaaatgctctttcctccttc 810

                                                                       
Query: 64  ctttgttcttcccctgacttggaatattcactgggctgaagcttcctctgtgtgtaaagg 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctttgttcttcccctgagttggaatattcactgggctgaagcttcctctgtgtgtaaagg 750

                                                                       
Query: 124 cagctcacatgctatagttaaatgtgatgccagacctgagattggaagtagacatcgctg 183
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 749 cagctcacatgctatagttgaatgtgatgccagacccgagattggaagtagacatcgctg 690

                                                                       
Query: 184 ctcagtgcctccagaatccacacagtttctttgtgttcattcaagaagaaatgctgctcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctcagtgcctccagaatccacacagtttctttgtgttcattcaagaagaaatgctgctcc 630

                                                                       
Query: 244 ttgctgaagagatggcagttcaggggtggggaggataataggtgttctgttttagggctc 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttgctgaagagatggcagctcaggggtggggaggataataggtgttctgttttagggctc 570

                                                                       
Query: 304 ttctctagcctgctggtgaagctgactgtgatggggttgaagtttctcgagagactgagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttctctagcctgctggtgaagctgactgtgatggggttgaagtttctcgagagactgagg 510

                                                                       
Query: 364 acttcctctcactcagacacattccctaggagagaagacagatggttgttcgtggggagg 423
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 509 acttcctctcactcagacacattccctaggagagaagatagatggttgttcgtggggagg 450

                                                                       
Query: 424 aagaggaacagggagataaacacacttattctcaagaattatgataaaaagtgcatttac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aagaggaacagggagataaacacacttattctcaagaattatgataaaaagtgcatttac 390

                                                                       
Query: 484 ccaagggctttggctttagccacactgaaattattgacctccagctattagaaagtaaaa 543
           ||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 389 ccaggggctttggctttagccacactgaaattatcgaccttcagctattagaaagtaaaa 330

                                                                       
Query: 544 tagccagtcaattttcctcagcttgaatcttaatctttcatatgacactatattgtaaca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tagccagtcaattttcctcagcttgaatcttaatctttcatatgacactatattgtaaca 270

                                                                       
Query: 604 aatgacagtggaaaggactcaactttgtgtctggcttattgtatatttattacccgcaaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aatgacagtggaaaggactcaactttgtgtctggcttattgtatatttattacccgcaaa 210

                 
Query: 664 taattg 669
           ||||||
Sbjct: 209 taattg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no231_c14.g1 MSMg01no231_c14.g1 CHROMAT_FILE:
MSMg01no231_c14.g1 PHD_FILE: MSMg01no231_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:23 2005
         (303 letters)



>mm_chr1_23578542_23579244
          Length = 703

 Score =  569 bits (294), Expect = e-166
 Identities = 300/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagaaagacttcagactcaaaggctggagtcagagagagaggggagtgtggacaggct 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agcagaaagacttcagactcaaaggctggagtcagagagaaaggggagtgtggacaggct 260

                                                                       
Query: 61  gtcattctcacagatagatcgagaaaaaaggagagcccctgggtcttccataaggagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcattctcacagatagatcgagaaaaaaggagagcccctgggtcttccataaggagcaa 320

                                                                       
Query: 121 agatctctctgacccaactcccgctcttccacatcatagctttcctctgtcctgaggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatctctctgacccaactcccgctcttccacatcatagctttcctctgtcctgaggcat 380

                                                                       
Query: 181 tgtgggtaacactgaagacccattcagatgcatattgtctgttctatctcttttctaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgggtaacactgaagacccattcagatgcatattgtctgttctatctcttttctaatt 440

                                                                       
Query: 241 tctattcatctcttgagcttggactataaacccatgtctgagaacctcatttattcttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tctattcatctcttgagcttggactataaacccatgtctgagaacctcatttactcttat 500

             
Query: 301 gg 302
           ||
Sbjct: 501 gg 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)