BAC Information

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BAC

Clone NameMSMg01-231E01
Chromosome1 (Build37)
Map Location 48,063,034 - 48,063,199
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231E01.T7 (MSMg01no231_e01.b1)MSMg01-231E01.TJ (MSMg01no231_e01.g1)
ACCAG398129AG398130
length704790
length of high quality
(start - end)
548 (46 - 593)174 (77 - 250)
definitionCHROMAT_FILE: MSMg01no231_e01.b1 PHD_FILE: MSMg01no231_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:30 2005CHROMAT_FILE: MSMg01no231_e01.g1 PHD_FILE: MSMg01no231_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTAACGCATACTGAATGGCTGAGAAGCACTTTACAAAAAAA
AAAGAGAGAAAGAAAAAAAGACCCGAAAAGAAAGAAAGAAAAAAGTTCAA
CGTACTTAGTCATCAGGGAAATGCAAATTACAACAGCCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCGAAAGATCAGGTGACAGAAAAAT
CTTAATAGAAATAGCTCACGTAATTTAGCTGTTGATATTCCCTAATGAAA
TAAGGAAAAGAATAGTTACTGGACCCTCACTTGGGGTTGCAACCAGTATT
GTCTTAGATCTTTCTTGACTGCAAGCGATTTGGGGAGATGTTAGAGGATA
TAGCAACTGGAAATTTGACTGAAATATGGTCATGATGATGTAGTTTTGTG
GTATTCAAGATGCTTTGTATTCACCCATGATCTGAAAAAAATGACTCCTA
ACTCATAATTTATAAGAAATGCCAACAGTTTCATATGGTTTAGTGTTGGA
CTTCAGCGGAATCAATATGCTCATAAGTCATTGGTGCCCTACATTGAGAA
CCAATGTTTGTTCCTGTCTCCTAGGTAATTAAGCACAATTAAATAACACT
AATTATTTACGGGATATATTTGTGATGAGTGAGTATAACATCTGCATTTT
ATAT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAACATATTGCAGTATATGT
AGTAATTTGGAGACAGTTGATGCCCTGGAATTTAAAAGGTGACATATTTC
TAGGTTTTAGAGATTCATGAGTTCCTAGTTGATTCATATCATTATTATTA
TTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTTTTCCTTTTCCCTTCCCTTTTTTCTCCTTTTCCCCTTTTCTCCCTTT
TTTTTCTCTCTCCCCCTTTTTTTTCTTCCCTCCCCTTCTTCCTTCCCTTC
CGCCCGTCCTTTTTTTTTTTTTCTCCCCCCCCCCCCCCTCCCGCTTTTTT
GCTCTCCTTTCCTATTTCTCCTTTCCCCCCCCCCCCAATAAAAATATACC
CCTTTTTTCGCGTGTTTTTCTTCCCTTTTCCCCGCTTTTCCGCTTCTTTC
CTTCTTTCCCTCTTTCTTTCCTCTCTTTCTCCCTTTTTCCCCTTTTCCTC
CTTTTCTTCCCCCTTTTCCTCCTCTTTCTTCCTCTTTCCCTTTTCCCCTT
TTTTTTTTTTCCCTTTTTCTCCTCCCCCGACCCATTATTCTTACAAACCT
TTTTTCTTTTTTTTCCATTCCCCTTTCCCGTTTTTTTTTTTCCGTTTCCT
TCCCTCGCTCCTTCCTCCTTTTTCCTCCTTTTTTTTCCCTATTTTTTCCC
TCCTGTCCCTCATTTTTCCACTTCCCTTTTTTCCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_e01.g1 MSMg01no231_e01.g1 CHROMAT_FILE:
MSMg01no231_e01.g1 PHD_FILE: MSMg01no231_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:30 2005
         (174 letters)



>mm_chr1_48062834_48063407
          Length = 574

 Score =  290 bits (150), Expect = 3e-83
 Identities = 162/166 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctaacatattgcagtatatgtagtaatttggagacagttgatgccctggaatttaaa 60
           |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 201 tttctaacctattgcagtatatgtagtaatttggagacagttgatgtcatggaatttaaa 260

                                                                       
Query: 61  aggtgacatatttctaggttttagagattcatgagttcctagttgattcatatcattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgacatatttctaggttttagagattcatgagttcctagttgattcatatcattatt 320

                                                         
Query: 121 attattattattattattattagtagtagtagtagtagtagtagta 166
           ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 attattattattattattagtagtagtagtagtagtagtagtagta 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)