Query= MSMg01no231_k04.b1 MSMg01no231_k04.b1 CHROMAT_FILE:
MSMg01no231_k04.b1 PHD_FILE: MSMg01no231_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:58 2005
(350 letters)
>mm_chr1_59888253_59888992
Length = 740
Score = 569 bits (294), Expect = e-166
Identities = 329/350 (94%), Gaps = 17/350 (4%)
Strand = Plus / Plus
Query: 1 tttgaaatgattagaaacaaagttactcattgcagcattgttacagcaaaacagaagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tttgaaatgattagaaacaaagttactcattgcagcattgttacagcaaaacagaagtaa 267
Query: 61 ccaaatgtacatcagtagagagcaggttatgttactttgccacaatagtataaaaaaatt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 ccaaatgtacatcagtagagagcaggttacgttactttgccacaatagtataaaaaaatt 327
Query: 121 gtatgaagttttagaatttaaagtatattcagattaaatacagataagcttcaaggaaat 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 328 gtatgaagttttagaattta-------ttcagattaaatacagataagcttcaaggaaat 380
Query: 181 attaagtacttcagaagaggatatggccatgcattcctatttgtttctttattctacaca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 attaagtacttcagaagaggatatggccatgcattcctatttgtttctttattctacata 440
Query: 241 cataaggaaaatttaaaaaatacaaatacatatgcacatgtatgtggttgtgtgtgtgca 300
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cataaggaaaatttcaaaaatacaaatatatatgcacatgtatgtggttgtgtgtgtgca 500
Query: 301 tatgtgcattgttgagaactagagatgttaagaagacttcactgaatagc 350
| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 t--------tgttgagaactagagatgttaagaagacttc--tgaatagc 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 740
Length adjustment: 9
Effective length of query: 341
Effective length of database: 731
Effective search space: 249271
Effective search space used: 249271
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_k04.g1 MSMg01no231_k04.g1 CHROMAT_FILE:
MSMg01no231_k04.g1 PHD_FILE: MSMg01no231_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:58 2005
(645 letters)
>mm_chr1_60031141_60032184
Length = 1044
Score = 1216 bits (629), Expect = 0.0
Identities = 641/645 (99%), Gaps = 1/645 (0%)
Strand = Plus / Minus
Query: 1 cagggctattttcagcaaacactggaaaaactaataattgtgaatttcagtgggagatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cagggctattttcagcaaacactggaaaaactaataattgtgaatttcagtgggagatac 785
Query: 61 gcaagtaatcactgcactaccctttcaagttatttgaaaattctaatgtaaaaagtgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gcaagtaatcactgcactaccctttcaagttatttgaaaattctaatgtaaaaagtgtgt 725
Query: 121 ttatgtagggtacttacgagcattcctcaaagactttgaccctttcacagccctctggag 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ttatgtggggtacttacgagcattcctcaaagactttgaccctttcacagccctctggag 665
Query: 181 gttcccttttaaacatgtaactgttattaggttttggtgaggttgcatattttggcaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gttcccttttaaacatgtaactgttattaggttttggtgaggttgcatattttggcaaag 605
Query: 241 gagaattgtttccattctctgtaagaaatgacatcaaaacactattataaaatgcatcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gagaattgtttccattctctgtaagaaatgacatcaaaacactattataaaatgcatcaa 545
Query: 301 aacactataatcaatattcttgaacttctgcagagaagtactcaaagacaggcagcgtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aacactataatcaatattcttgaacttctgcagagaagtactcaaagacaggcagcgtgc 485
Query: 361 tttcttcattaacaccccaacaactaagacattgctggcttaaaaaaaaaagaattaaac 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 484 tttcttcattaacaccccaacaactaagacattgctggctt-aaaaaaaaagaattaaac 426
Query: 421 ttgcatgtaaatgtaaaaataaattatcagttttgtttcttttctacttacaagtatcta 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttgcatgtaaatgtaagaataaattatcagttttgtttcttttctacttacaagtatcta 366
Query: 481 ctgagtcctggagcactgactcctcagactgcacacacaccaatctggctaccttgtatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgagtcctggagcactgactcctcagactgcacacacaccaatctggctaccttgtatc 306
Query: 541 tatatactcagcaaatactctcagcatgtattttccccagcacatgtatctgaaacagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tatatactcagcaaatactctcagcatgtattttccccagcacatgtatctgaaacagtt 246
Query: 601 cttcactggctgcttgctactgacccttggcctgccctgtatctc 645
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 245 cttcactggctgcttgctattgacccttggcctgccctgtatctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
