CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGACAGCTGACACTAGTTCATGAATTTTGTCTTATCTGGAGTTGAA
CTATCCAGGGTTAGTAAAATGGAAAAAAAAAACCAACCTGTGGTCATTTG
TGTTCATATAATTTAGGTACATGTATGGTACCCTCTTGCCTGTTATCTTT
AAAAGCTGGAATGAATCTTTGGTCAATTTATTTAAGAACTTTTAATTCCA
CGCCTTTAATTCCATCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTT
CGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGGCAGGACTATAC
AGAGAAACTTTGTCTCACACCCCCCCCCAAAACAAAAACAAAAAAAACCC
AAACAAACAAACAAACCCACAAACAAAACAAAAAACTGATCCTCACCTAA
TCAGCTATACCTACACTAAATTACTTCCTTCCATCTTTTTTTTCAAGACA
CAAAGTATGACCTGACATGCACCCCCTCTAACATAAGGTACCCCGATGTA
TTTCCCCCTAACATAAGGTACTCTGAATACCTAACAGATGTAAACAAAGA
CTATTTTCTTGCGGCTCTTTTTCTGATCAGGCAAATTACAAATGTCTTGG
ATGAACTTAATTCCACAGGAACCAGCTCAGTGAATTTATCTTTGTACAGT
TTTGCTTTCAAAGGAN

ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAGATTTTGTTCTTCTGATGAGTT
TTAAAAATCATTAAATTGTCTCTTTGCTATTTTCTGTATTTATTATGGCT
GTTAAAAAACTGTGTATTTTATTCCATTCTGTTTCCCATGATAACGCTGG
GAAATTTCTTCATTTTTCTTACAGCAACGCTGGTGTCATTTCTATTATGC
TTTTTAATACAATGGGCTAAAAATAAGGCTACACAAGAGTATAGCCAACT
CTATCAGAGGAAAGCCTGCCTATGTTGAACTACCTCTGATTTTTAGATTT
TGAAATCAGTTATTCTTTTTACACCACCCCCACCAACACTGGGAATCACA
GTGTGCTAAGCCAACACCCGCACGACTTTTTTAAAAGAACGTAGAATGTA
GTTAGTTTTGTTTATTCTCTGCATTGTCTGTCTTGATCCTGAATCCAAAA
TGAGTTTGATGACATCCAAAAATCAATATTCTACGTGGTTTCATTCATTC
TACTTTACAATTCCTTCTGTGTGTGCCACACAGTTCCATCAGGGTAGCAC
AAAGACGAATTCAGTAGAAAATAGATTGGCAAAAGCCTAAGCAAAAGCAA
CATTGTTGGAGGTATTCCAGGACCTGACCTTGAACTACAGGCCCCCAGCA
TTAAAACAAAAACAATACTA

Query= MSMg01no231_n14.b1 MSMg01no231_n14.b1 CHROMAT_FILE:
MSMg01no231_n14.b1 PHD_FILE: MSMg01no231_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:13 2005
         (316 letters)



>mm_chr1_62410866_62411581
          Length = 716

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagacagctgacactagttcatgaattttgtcttatctggagttgaactatccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattcagacagctgacactagttcatgaattttgtcttatctggagttgaactatccag 345

                                                                       
Query: 65  ggttagtaaaatggaaaaaaaaaaccaacctgtggtcatttgtgttcatataatttaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggttagtaaaatggaaaaaaaaaaccaacctgtggtcatttgtgttcatataatttaggt 285

                                                                       
Query: 125 acatgtatggtaccctcttgcctgttatctttaaaagctggaatgaatctttggtcaatt 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acatatatggtaccctcttgcctgttatctttaaaagctggaatgaatctttggtcaatt 225

                                                                       
Query: 185 tatttaagaacttttaattccacgcctttaattccatcactcaggaggcagaggcaggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tatttaagaacttttaattccacgcctttaattccatcactcaggaggcagaggcaggtg 165

                                                                       
Query: 245 gatttctgagttcgaggccagcctggtctacaaagtgagttccaggacaggcaggactat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gatttctgagttcgaggccagcctggtctacaaagtgagttccaggacaggcaggactat 105

                     
Query: 305 acagagaaac 314
           ||||||||||
Sbjct: 104 acagagaaac 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_n14.g1 MSMg01no231_n14.g1 CHROMAT_FILE:
MSMg01no231_n14.g1 PHD_FILE: MSMg01no231_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:13 2005
         (288 letters)



>mm_chr1_62277237_62277924
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagattttgttcttctgatgagttttaaaaatcattaaattgtctctttgctattttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagattttgttcttctgatgagttttaaaaatcattaaattgtctctttgctattttct 260

                                                                       
Query: 61  gtatttattatggctgttaaaaaactgtgtattttattccattctgtttcccatgataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatttattatggctgttaaaaaactgtgtattttattccattctgtttcccatgataac 320

                                                                       
Query: 121 gctgggaaatttcttcatttttcttacagcaacgctggtgtcatttctattatgcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgggaaatttcttcatttttcttacagcaacgctggtgtcatttctattatgcttttt 380

                                                                       
Query: 181 aatacaatgggctaaaaataaggctacacaagagtatagccaactctatcagaggaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacaatgggctaaaaataaggctacacaagagtatagccaactctatcagaggaaagc 440

                                                           
Query: 241 ctgcctatgttgaactacctctgatttttagattttgaaatcagttat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcctatgttgaactacctctgatttttagattttgaaatcagttat 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)