CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCCCGTCCTTCGGGTAACATCTGGACACAGAGGCACGTACCTG
TAGCTCAGTGCTCATGTGCCTGGTCAGGTAGCCAAGCACTAGTGAAGTGG
AGGCAGGAGGATCAGAAATTCAAGGTTCCCATCACTACATGGTGAGTTTG
TCTTCAGTCTGCGCTCAGTGAGATCCTGTGTCTCAAAAAAAGGCAGCTAC
AGTAAAAGCAGTTGTGTGTAGTCAGCTAACCAAGGTGTGGGGTGTAAGCT
AAGAGAGTGGAAAGCACGCACAGTGTTTAATTTGTGATCCCTCCTTCTAG
AAACGACTACTTGAACATGGCAAAAATGTAAATACAGAAAAGCTGAGAGC
CCCTATCATCTGCGCGCTTGGACATGTAGACACAGGAAAGACAAAAATTC
TAGATAAGGTAAGAGAACATGTGCATTAATAGCCTGTGAACAAAGAAGAC
GTTCCTCTGACAGCTGTGCAGTTGAGCAGCCTGTCAGGGCATCAGCAATA
CTGTAACTGAGTCAAGGGGACTGGGGGAGGGGGCCCAGGTATCTGTTCAG
AGAGCTTTCGTCTGGGGTCACTAATACAGCCACTCTGTCTACAAAGGAGT
TCTTCATGCCAAAATACCAATCTCATTTTGCTGTCTTTTCATAGCTCCGT
CACACACATGTGCAAGATGGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCGAAAGCTGCCCAAGCCCCATC
CCCATGGGGGTCCAGTGGCAAGTAAGTTCACGTTCCCCAAATGCAGATAA
ACCACGCATTGCATGACGCGATACCCGGAGGGAGGGGCTGCCCTCCCTGC
CTGGCCTGCTCCCAACCTCTCCACTCTGGATTTTCTACCTCTCTTCTTCC
AGGAGCACTGGAAGCCCATCCCCCATGTCTCCCAACCCTTCTCCCGCCAG
CTCCGTGGGGTCTCAGGGCTGCCTCTCCAGCTCCAGCGGCCTATCCCCAT
CGACCATTTTTTGTATCCCCCACCGCATTCACCAGATGGCAGCCAATCAC
GTCAGCATCACCCCCCCCATCCTCCACAGCTATGACTACTGGGAGATGGC
TGATAACCTGGCCAAGGAAAACAGAGGTGTGTGCACAAGCCCTGGAGAAT
GGGGACCCGCCCAGGCACAGGGAAATATGCCCGAGGCGCATTGGCAATCA
AATTTCACAGTTCACAAAAGGAGAAAGACCAGGCTGGTACCTGCCACCTG
GCCCGGCTTTTACTCTTGCTGTGTATAACTTGGCGCACCCCATCATATGC
CCATTTATCCACATGTATCTATCATTCCACCTTTCATATCTACCCCGATC
TTTCCCGTTACCTCCTTATGCAATTTCCCTTACN

Query= MSMg01no232_a15.b1 MSMg01no232_a15.b1 CHROMAT_FILE:
MSMg01no232_a15.b1 PHD_FILE: MSMg01no232_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:26 2005
         (597 letters)



>mm_chr1_38093620_38094616
          Length = 997

 Score = 1108 bits (573), Expect = 0.0
 Identities = 591/597 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcaggtagccaagcactagtgaagtggaggcaggaggatcagaaattcaaggttcccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcaggtagccaagcactagtgaagtggaggcaggaggatcagaaattcaaggttcccat 260

                                                                       
Query: 61  cactacatggtgagtttgtcttcagtctgcgctcagtgagatcctgtgtctcaaaaaaag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cactacatggtgagtttgtcttcagtctgtgctcagtgagatcctgtgtctcaaaaaaag 320

                                                                       
Query: 121 gcagctacagtaaaagcagttgtgtgtagtcagctaaccaaggtgtggggtgtaagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagctacagtaaaagcagttgtgtgtagtcagctaaccaaggtgtggggtgtaagctaa 380

                                                                       
Query: 181 gagagtggaaagcacgcacagtgtttaatttgtgatccctccttctagaaacgactactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gagagtggaaagcacgcacagtgtttaatttgtgatccctccttctagaaacgacgactt 440

                                                                       
Query: 241 gaacatggcaaaaatgtaaatacagaaaagctgagagcccctatcatctgcgcgcttgga 300
           |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 441 gaacatggtaaaaatgtaaatacagaaaagctgagagcccctatcatctgtgtgcttgga 500

                                                                       
Query: 301 catgtagacacaggaaagacaaaaattctagataaggtaagagaacatgtgcattaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtagacacaggaaagacaaaaattctagataaggtaagagaacatgtgcattaatag 560

                                                                       
Query: 361 cctgtgaacaaagaagacgttcctctgacagctgtgcagttgagcagcctgtcagggcat 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 cctgtgaacaaagaagacgttcctctgacagctgtgcagtcgagcagcctgtcagggcat 620

                                                                       
Query: 421 cagcaatactgtaactgagtcaaggggactgggggagggggcccaggtatctgttcagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagcaatactgtaactgagtcaaggggactgggggagggggcccaggtatctgttcagag 680

                                                                       
Query: 481 agctttcgtctggggtcactaatacagccactctgtctacaaaggagttcttcatgccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctttcgtctggggtcactaatacagccactctgtctacaaaggagttcttcatgccaa 740

                                                                    
Query: 541 aataccaatctcattttgctgtcttttcatagctccgtcacacacatgtgcaagatg 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aataccaatctcattttgctgtcttttcatagctccgtcacacacatgtgcaagatg 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no232_a15.g1 MSMg01no232_a15.g1 CHROMAT_FILE:
MSMg01no232_a15.g1 PHD_FILE: MSMg01no232_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:26 2005
         (279 letters)



>mm_chr1_38238026_38238704
          Length = 679

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcgaaagctgcccaagccccatccccatgggggtccagtggcaagtaagttcacgttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 479 atcgaaagctgcccaagccccatccccatgggggtccagtggcaagtaagttcactttcc 420

                                                                       
Query: 61  ccaaatgcagataaaccacgcattgcatgacgcgatacccggagggaggggctgccctcc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 419 ccaaatgcagataaaccacgcattgcatgacgcgatacctggagggaggggctgccctcc 360

                                                                       
Query: 121 ctgcctggcctgctcccaacctctccactctggattttctacctctcttcttccaggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgcctggcctgctcccaacctctccactctggattttctacctctcttcttccaggagc 300

                                                                       
Query: 181 actggaagcccatcccccatgtctcccaacccttctcccgccagctccgtggggtctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 actggaagcccatcccccatgtctcccaacccttctcccgccagctccgtggggtctcag 240

                                                  
Query: 241 ggctgcctctccagctccagcggcctatccccatcgacc 279
           ||| |||||||||||||||||||||| ||||||||||||
Sbjct: 239 ggcagcctctccagctccagcggcctgtccccatcgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)