BAC Information

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BAC

Clone NameMSMg01-232E17
Chromosome1 (Build37)
Map Location 190,215,967 - 190,216,337
singlet/doubletsinglet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232E17.T7 (MSMg01no232_e17.b1)MSMg01-232E17.TJ (MSMg01no232_e17.g1)
ACCAG398847AG398848
length728725
length of high quality
(start - end)
365 (46 - 410)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no232_e17.b1 PHD_FILE: MSMg01no232_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:45 2005CHROMAT_FILE: MSMg01no232_e17.g1 PHD_FILE: MSMg01no232_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCATGTGCTTTCACATGTTTGTTGATCATCTTATATGTAAAGAG
CTAGGGCATGCCATCCCATTGCGGAGGGTTAAGAATAAGAACACTAAGCA
GCCATGACACGCTGAGAAATTTTTAGGCAGGCAACAAAATAGAACAACCC
ACGATGATTGAAGCCCACCAGTTTTAACTGCTTCACAAGCTAAGGACATG
TACTAATATCAGGTAAATACATTACAACAATATATTACAAACATCATAGC
TCCATTCTGGATGCTTTTAATGGTAGATGGGGATGTAGTAGGTTTAAAAA
AATGAAACTTTACATAAAAAAACACTACCACATGTGAAATGAAAAACTGA
GTGGAATTGACGCCCCCCACTCACTACCACTTGTGAAATGAAAAACTGAG
TGGAATTGATGGCAGATTGACCATTCAATAAAATATTAAGACGCAACCCA
ACAGCAATATAAATGCGACGTAGAGATAAGGGTGACTGATAAGAGTGAAG
GTGGTGCCAGTGAGCCGTCACACAACGTCACACGACTTCATGCGAAACTG
AATTCCCTGGAGGAGAGGAAGGGTCTGGGACAGACAAACATACCTAGAAA
TAGAACTAATAATAATACATCTTCATAGAAATCAAAGTTAGAACTTTCTA
AAACTGTATATACAACCCTATAGTCTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATTCTTCTCCTGCCCACCTATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACTATTTC
CTAAACACATGAAACTCAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_e17.b1 MSMg01no232_e17.b1 CHROMAT_FILE:
MSMg01no232_e17.b1 PHD_FILE: MSMg01no232_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:45 2005
         (365 letters)



>mm_chr1_190215773_190216537
          Length = 765

 Score =  629 bits (325), Expect = 0.0
 Identities = 355/371 (95%), Gaps = 10/371 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatgtgctttcacatgtttgttgatcatcttatatgtaaagagctagggcat 64
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattctccgtgtgttttcacatgtttgttgatcatcttatatgtaaagagctagggcat 254

                                                                       
Query: 65  gccatcccattgcggagggttaagaataagaacactaagcagccatgacacgctgagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 255 gccatcccattgcggagggttaagaataagaacactaagcagccatggcacgctgagaaa 314

                                                                       
Query: 125 tttttaggcaggcaacaaaatagaacaaccca----------cgatgattgaagcccacc 174
           ||||||||||||||||||||||||||||||||          ||||||||||||||||||
Sbjct: 315 tttttaggcaggcaacaaaatagaacaacccattgtattccacgatgattgaagcccacc 374

                                                                       
Query: 175 agttttaactgcttcacaagctaaggacatgtactaatatcaggtaaatacattacaaca 234
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agttttaactgtttcacaagctaaggacatgtactaatatcaggtaaatacattacaaca 434

                                                                       
Query: 235 atatattacaaacatcatagctccattctggatgcttttaatggtagatggggatgtagt 294
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 435 atatattacaaacatcataactccattctggatgcttttaaaggtagatggggatgtagt 494

                                                                       
Query: 295 aggtttaaaaaaatgaaactttacataaaaaaacactaccacatgtgaaatgaaaaactg 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aggtttaaaaaaatgaaactttacataaaaaaacactaccacatgtgaaatgaaaaactg 554

                      
Query: 355 agtggaattga 365
           |||||||||||
Sbjct: 555 agtggaattga 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)