Query= MSMg01no232_i12.b1 MSMg01no232_i12.b1 CHROMAT_FILE:
MSMg01no232_i12.b1 PHD_FILE: MSMg01no232_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:02 2005
(320 letters)
>mm_chr1_126966487_126967207
Length = 721
Score = 582 bits (301), Expect = e-171
Identities = 315/323 (97%), Gaps = 7/323 (2%)
Strand = Plus / Minus
Query: 5 gaattcattgacatactacacagcatttgctttctaagggggcttcattagttttctgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaattcattgacatactacacagcatttgctttctaagggggcttcattagttttctgtg 399
Query: 65 attaataatcatttgtgtgtatgcatgtattcatttgcttgtttattcttagggaatttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 attaataatcatttgtgtgtatgcatgtattcatttgcttgtttattcttagggaatttt 339
Query: 125 tgtactgggctgaattt-aaaaaaaaaatagccattatctttgaaaagaactttccgtca 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtactgggctgaatttaaaaaaaaaaatagccattatctttgaaaagaactttccgtca 279
Query: 184 actcctccaaagcacataacgttctcaaaagacatcctaacagaggtgcagattttatat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 actcctccaaagcacataacgttctcaaaagacatcctaacagaggtgcagattttatat 219
Query: 244 gg------ttttttttttttgcattttctgcatcattggtaacagaagataatttgttat 297
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 218 ggttttttttttttttttttgcattttctgcatcagtggtaacagaagataatttgttat 159
Query: 298 ggatatacctatatcttttgatt 320
|||||||||||||||||||||||
Sbjct: 158 ggatatacctatatcttttgatt 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_i12.g1 MSMg01no232_i12.g1 CHROMAT_FILE:
MSMg01no232_i12.g1 PHD_FILE: MSMg01no232_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:02 2005
(359 letters)
>mm_chr1_126876478_126877236
Length = 759
Score = 687 bits (355), Expect = 0.0
Identities = 358/359 (99%)
Strand = Plus / Plus
Query: 1 acaaccacatggaagggctcaggatgatgggtaataagcaacttgactttgtgaccaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaccacatggaagggctcaggatgatgggtaataagcaacttgactttgtgaccaaca 260
Query: 61 aatcatgttagagccatccactcgcctcctctgatagagcagcaggccttgcatgcaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcatgttagagccatccactcgcctcctctgatagagcagcaggccttgcatgcaggg 320
Query: 121 aggaagggacagatataatatattttgacttcagggaggcttctgactctgttccacatg 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagggacagacataatatattttgacttcagggaggcttctgactctgttccacatg 380
Query: 181 acatggtcatcaacaaggtgggaaaatatggcttgctgtcagagatggattaaattgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatggtcatcaacaaggtgggaaaatatggcttgctgtcagagatggattaaattgatt 440
Query: 241 agagaggtggctaattgggaagaaaagcaaagtcacccgttgcccagatacacaagtgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaggtggctaattgggaagaaaagcaaagtcacccgttgcccagatacacaagtgcc 500
Query: 301 aaggcaatatgctactgatttgcatctggttaaagacaagggcaaatctatatagcaag 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggcaatatgctactgatttgcatctggttaaagacaagggcaaatctatatagcaag 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
