BAC Information

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BAC

Clone NameMSMg01-233F04
Chromosome1 (Build37)
Map Location 80,772,126 - 80,772,411
singlet/doubletsinglet
Overlap genenone
Upstream geneMrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233F04.T7 (MSMg01no233_f04.b1)MSMg01-233F04.TJ (MSMg01no233_f04.g1)
ACCAG399566AG399567
length758732
length of high quality
(start - end)
328 (35 - 362)288 (79 - 366)
definitionCHROMAT_FILE: MSMg01no233_f04.b1 PHD_FILE: MSMg01no233_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:00 2005CHROMAT_FILE: MSMg01no233_f04.g1 PHD_FILE: MSMg01no233_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCATTTTCCTTAGCGATAGACCTTTAATTTGTTACTCAATACAAAAC
GGCTGGTTATGAATTCATATACATATGAGCCACACTGAATAGATTCACAA
GGCTGTCTTTATTTTTATGCATATGTATATACATCACAGCAAAAATCATA
GAAAAAGAATCCATGGATTTGAGAGGGGTCGAGGGGGTTGAAAGTAGGGA
AGGTAAAAGGGAAATGATGCAATCATATCTTAATTAAAAATAAAGTAATA
AGCCAGGGGGTGGTGCACGCCTTTAATCCCAGTGTCGAGAAGGCAGAGGT
AGGAAGATAGCTATGATTTTCATGCCCCCCGCCCTCCAGAAGTGAGTTCT
AGGACAAACAGGGCTACCTTGACCCAGCCTGACAAGAAAAACATATCGGC
CAATGTTAAAAATAACAGCAAAGCGGAAGGCTTGCTTATGCCTCACTTCC
TTTTTCTCGAACTTATCTTTTCCACATTTTTCCCTTTCTACTGAAAAAAT
GACTCCTCTGTTCTTATACCACACCCTCGATTATGATCCTTCACTCTCTA
TACTCAATATAAGAATCTTCCCCTTACGGAAGCATCTTGGCTTTCCATTC
CTTACTTCCACAAACAAACAAGGCTTTCCTTATGTTCCGACCGACGCCAC
GCCATTGATACAACACATAAATTGAGAAAAAAAAAACCCACCCCCCTTAT
CCATCGAA
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATTCTCCACAGAACGGTAC
TTTTCCTCCTTCGGAGAGAAAATGGTTTTAAAAAGAAACACACTATATTC
AAAAAGCTAATAAACCATTAAATCTAAAGTGAATCAATAACAGGGAAACA
ACGCTAGAAAGTAACTAACCACAACATGCTCATTTGGACTTTTACCCAGA
AACAACCATTAAGGCTTCCTGATTCCTCACCAGTGGAAGCTCCAGTCAGA
TAGAAGCTCATATTCTGTGGAAGTAAGAGTTTGCTCATAGTGCAGCCTCG
TCTCCCTGCCTGCATATATTGTATGACCCTCCCTGCCTGCTGACAGAATG
ACCTGGCCTCCTCTCCCTGCCGCCAGAACTGAGAGGACTGCTCTTTCTCA
CTGCAGGTCTGCCTGGCTTCCTTGCTCATATATGAGCAAGCACACTGCAT
GCAGAATCAACAGAGCCTTCCAACTGTTTCCCTAACCACTAGCCAACCTC
AAAACTCAGCTTCCATTGTCTTCTTAGGAATGGACCCTTTATTTACATTT
CAAATGCTATCCAGAAAGTTCCCTATACCCTCCCTGTGCCCTGCTCCCCT
ACCCACCCACTCCTGCTTCCTGACCCTGGTATTCCCCTATACTGGTGCAT
ATGATCTTTGCAAGACAAAGGGCCTCTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_f04.g1 MSMg01no233_f04.g1 CHROMAT_FILE:
MSMg01no233_f04.g1 PHD_FILE: MSMg01no233_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:00 2005
         (288 letters)



>mm_chr1_80771926_80772613
          Length = 688

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaattctccacagaacggtacttttcctccttcggagagaaaatggttttaaaaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caaattctccacagaacggtacttttcctccttcggagagaaaatggttttaaaaagaaa 427

                                                                       
Query: 61  cacactatattcaaaaagctaataaaccattaaatctaaagtgaatcaataacagggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cacactatattcaaaaagctaataaaccattaaatctaaagtgaatcaataacagggaaa 367

                                                                       
Query: 121 caacgctagaaagtaactaaccacaacatgctcatttggacttttacccagaaacaacca 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caacgctagcaagtaactaaccacaacatgctcatttggacttttacccagaaacaacca 307

                                                                       
Query: 181 ttaaggcttcctgattcctcaccagtggaagctccagtcagatagaagctcatattctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttaaggcttcctgattcctcaccagtggaagctccagtcagatagaagctcatattctgt 247

                                                         
Query: 241 ggaagtaagagtttgctcatagtgcagcctcgtctccctgcctgca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagtaagagtttgctcatagtgcagcctcgtctccctgcctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)