BAC Information

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BAC

Clone NameMSMg01-233L12
Chromosome1 (Build37)
Map Location 144,517,849 - 144,518,132
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73, B3galt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233L12.T7 (MSMg01no233_l12.b1)MSMg01-233L12.TJ (MSMg01no233_l12.g1)
ACCAG399829AG399830
length756738
length of high quality
(start - end)
33 (146 - 178)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no233_l12.b1 PHD_FILE: MSMg01no233_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:29 2005CHROMAT_FILE: MSMg01no233_l12.g1 PHD_FILE: MSMg01no233_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTTTTTTTTTTTTATATTGAATTTGAAATAAAAAACAGACTACATCAA
CCCCCCCANNNNNNGCAGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTCAATATAGCAATATCAGAGTCTCAAA
AGCAACTAAAGAAATGTTCAACAATCTTAGTTATTTACGCCCAACAAATC
AAAACGACTCCAAGAAACCACCTTATATCAATCATAATTGCTAAAACAGA
TAGAAAAAACAAATAAACTTAAGTAATAGCACATGTCTGTTAAGGGATTT
AAAGAATTGGAAATTGACTCTCCATTGCTGGTAGGCAGTGCAAAATTGCA
AAAAATACATCTGGGATATCAAAATTGGTGAGTTTCCCTGTAATTTTTGT
TAAATAAGCCCCCACCCCTAATAATTTTAACATAAAATTGAGGCAAGTTG
TTTTTATTATTCCCCCACCCCCCCCCCCCCAATTTTAAATCCCCTAATGG
AATTGTGGGGTTTTTTTATTTTTTTACCCTCTCTTTTCGCCGTTTTTAAT
TATCCCATTTTTTTCTTTTTTTAGAAATACGGGTGTTTAGAAGCCGGAAT
AGGGTTTACCTACCCGAAAAAGTGATTATATAAGGGGGGTTACCTGGAGA
AAAAGAGGGGGGTGTAGATTTTTTTTTCCGTCGAAATAGTATTGCTACGT
TTATAAAAACCATCTTAAAAATACATATAAAAGGCAAGCACAAAAAATCG
ATAAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGTAACTATGGTTGTCAAATTAA
ATGCTGGACAGCCATTAAATTTGAATTTCAGATTAACAATTAGCAACTTG
AGGAATATGCAGAAAACACTTAGGGAATATGTACACTAAATATTTCTTGT
TGATTTGAAATTCAAATTTTGTTCAGCATCCTCCATTTTCACTTATTAAT
TCTACCTGTAATGAAAAGGATTGCTTGGGGACTTCCTAGCATCATGGTTG
AATTTATTTAGAAAAGAATTTACTCATACCATGGGTTTTTTTTTTCTTGT
TCGGTTTTCTTTATCTTAGTGGCCTCCCCCGCCCTACACACTTTTGTTTT
TGCTTTTGTTTTGTTTGCTCTTCCCCTTTATCCATGACAAGCATTTTCCC
CTACACACCTTTACTCTTATCCAATTTTGGTATCTGTTTTGTAAAGAGTT
GTAACTTCTACACAGTCCTTTAAAACTGATAAAATATCTATCTTTATTTC
TACAGCAAGCTCTATTTTTGCTTTTTTTTCTGTGTCCTCCAGACCAATTA
TTTGTTGAATTCTCTCAAGGAATATGGATTATATTAGGTACACATTTCTT
CTTGAATTTACACGGACTCCACTTTTTTATAATAACTATTATTTCCTATA
TAAATTCGTCACGCCCACCCTATAAACCCTACTTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_l12.g1 MSMg01no233_l12.g1 CHROMAT_FILE:
MSMg01no233_l12.g1 PHD_FILE: MSMg01no233_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:29 2005
         (287 letters)



>mm_chr1_144517472_144518155
          Length = 684

 Score =  472 bits (244), Expect = e-137
 Identities = 276/288 (95%), Gaps = 5/288 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtaactatggttgtcaaattaaatgctggacagccattaaatttgaatttcagattaa 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 661 ttgtaactatggttgtcaaattaaatgctggacagccatcaaatttgaatttcagattaa 602

                                                                       
Query: 61  caattagcaacttgaggaatatgcagaaaacacttagggaatatgtacactaaatatt-t 119
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 601 caattagcaacttgaggaatatgcagaaaacacttggggaatatgtacactaaatattgt 542

                                                                       
Query: 120 cttgttgatttgaaattcaaattttgttcagcatcctccattttcacttattaattctac 179
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 -ttgttgatttgaaattcaaattttgctcagcatcctccattttcacttattaattctac 483

                                                                       
Query: 180 ctgtaatgaaaaggattgcttggggacttcctagcatcatggttgaatttatttagaaaa 239
           ||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 482 ctgaaatgacaaggattgcttggggactccctagcatcatggttgaatttacttagaaaa 423

                                                           
Query: 240 gaatttactcataccatgggttttttttttcttgttcggttttcttta 287
           |||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 422 gaatttactcataccatgggttttttt---cttgttcggttttcttta 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 684
Length adjustment: 9
Effective length of query: 278
Effective length of database: 675
Effective search space:   187650
Effective search space used:   187650
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)