Query= MSMg01no233_o03.b1 MSMg01no233_o03.b1 CHROMAT_FILE:
MSMg01no233_o03.b1 PHD_FILE: MSMg01no233_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:41 2005
(683 letters)
>mm_chr1_140114965_140116044
Length = 1080
Score = 1197 bits (619), Expect = 0.0
Identities = 665/682 (97%), Gaps = 6/682 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctggcctaatgaccattgaaggttaatcattaaatacctacatcaacgaaaat 63
||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattccttgcctgatgaccattgaaggttaatcattaaatacctacatcaacaaaaat 263
Query: 64 agtatcacgctaataacttcaacttaaaaaaaaaaacttaaatgagaagctgatcaaact 123
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 agtatcaagctaataacttcaacttaaaaaaaa---cttaaatgagaagctgatcaaact 320
Query: 124 caacataagcaagtaaattaatgtcaaatcagaaaacactacataaatagaaaagagagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacataagcaagtaaattaatgtcaaatcagaaaacactacataaatagaaaagagagc 380
Query: 184 aatatagaaaatcagtgtaactaggagatcttttaccagagcaataaaaattaagtcaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatagaaaatcagtgtaactaggagatcttttaccagagcaataaaaattaagtcaag 440
Query: 244 aaaatgtccatgaacaaaatgacagtatcaacaaaaaatagaactaaagaagcaaccaaa 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtgtccatgaacaaaatgacagtatcaacaaaaaatagaactaaagaagcaaccaaa 500
Query: 304 aaagaatgtctagaaaaaaaa-taccacaatgacagaaaagtcaatagaggaatttactg 362
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaatgtctagaaaaaaaaataccacaatgacagaaaagtcaatagaggaatttactg 560
Query: 363 aaaattagacactgatcacatttttaaaagtactaaagaacttggaaagatcaatacaaa 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaattagacactgatcagatttttaaaagtactaaagaacttggaaagatcaatacaaa 620
Query: 423 gacaattaaatctaaaatg-caaaaagaaaaaacattttttaaaattttaattaatccta 481
||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 gacaattaaatctaaaa-gacaaaaagaaaaaacgttttttaaaattttaattaatccta 679
Query: 482 aggacccatgaaacaccaccaggtagttctatataaacaccatgcaagggctagcatgga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggacccatgaaacaccaccaggtagttctatataaacaccatgcaagggctagcatgga 739
Query: 542 aagaaataacatggacaaaggactatttgtagagatagtggcccatattactgaatttag 601
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct: 740 aagaaataacatggacaaaggactatttgtagagatagtggtccatattaccgaattgag 799
Query: 602 tcaatatagtaaacatccataanacacaaagaacttaattagagtaacctaaagttgaca 661
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcaatatagtaaacatccataaaacacaaagaacttaattagagtaacctaaagttgaca 859
Query: 662 catgaaatgtactgtagtcaaa 683
||||||||||||||||||||||
Sbjct: 860 catgaaatgtactgtagtcaaa 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1080
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1070
Effective search space: 720110
Effective search space used: 720110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_o03.g1 MSMg01no233_o03.g1 CHROMAT_FILE:
MSMg01no233_o03.g1 PHD_FILE: MSMg01no233_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:41 2005
(639 letters)
>mm_chr1_140278082_140279120
Length = 1039
Score = 1151 bits (595), Expect = 0.0
Identities = 625/635 (98%)
Strand = Plus / Minus
Query: 1 aattaaacgtacctgaagtgtattcacttattatcatcaatatccacttgtctactggcg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 835 aattaaacgtacctgaagtgtattcatttattatcatcaatatccacttgtctactggcg 776
Query: 61 atctttgtctgagatttttaattctgtttaccatttcttaaaccaagtaacattagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 atctttgtctgagatttttaattctgtttaccatttcttaaaccaagtaacattagaaaa 716
Query: 121 tgggcaaaactatactctagagaaaaggggactatttaaggagtaagggaaggctcttct 180
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 715 tgggcaaaactatactctagagaaaaggggactatttaaggggtaagggaatgctcttct 656
Query: 181 caggggtattttactgccttgtcttttaaaaaatagtgagctgtttggttagctgttatt 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 caggggtattttaccgccttgtcttttaaaaaatagtgagctgtttggttagctgttatt 596
Query: 241 attttcctttactgatgagattacttatttcttcatgcataggcccataggttagtcctc 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 595 attttcctttactgatgagattacttatttcttcacgcataggcccataggttagtcctc 536
Query: 301 ttgccgaagtcctgacgggatgaacagtgcagtgcatccttggcatacatgtgtcttagg 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 535 ttgccgaagtcctgacgggatgaacagtgcagtgcatccttggtatacatgtgtcttagg 476
Query: 361 agcttccttagtctgtctatccctgcagcgccagtgtaaaaatatgcagcacggatgatt 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 475 agcttccttagtctgtctatccctgcagcgccagtgtaaaaatattcagcacggatgatt 416
Query: 421 ctgttcttatttcctactcctcctttctcatttgggctcctagtttatttttataaggaa 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctgttcttatgtcctactcctcctttctcatttgggctcctagtttatttttataaggaa 356
Query: 481 aatagcattgctttttcccactgagtttcacctcttgtggtgggaaatgttccctgctct 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 355 aatagcattgctttttcccactgagtttcacctcttgtggtgggaaatgtcccctgctct 296
Query: 541 tcactatgacctgctgggggaggagatgcagtctaatgggtcttttactgagtggaatgg 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 295 tcactatgacctgctgggggaggagacgcagtctaatgggtcttttactgagtggaatgg 236
Query: 601 aaatgtgtcttgtgaggaggtggtctgtcccttca 635
|||||||||||||||||||||||||||||||||||
Sbjct: 235 aaatgtgtcttgtgaggaggtggtctgtcccttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
