CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCGAATTCCTTCTTTTGATGTCAGCCTTTACATCTTTTTTTGCT
TTCTATCCCCAAATCCCCAAGGTACCCCATAGTGTGCTTATGTCTGTGGG
TCCCATGCAGCTGCAAATATATCCAGTCATTCACTTACCTACTCATTCAG
GCATGCATCCATCCCACGCCTTATACACTCACTCAACATATACCGAGCTC
CTCATGTGCATTGAATAGAAACTCAGATACCTGAAAATTCATGTAGCAAA
GATTGGCTAAGGGAGAAAGCTGTCCATGGCTATGTGTAAAAGAAAAGAAT
CCAGATCATCAGATGATATGTATATAGTATGGAGGAAACCAGAGCTCATC
CACGGCCCAGGCAAAGCTGTGCATGCAACGAAACAAAGGGCCCTTAAAAT
CTTGCATGAAACACAAAGTTGGTTCCAGAGCAGTGTGTATGAAGTGTAAG
ATTGGTAGTAGATGGTGAAGAGGGTGGTCTCAGAATATGGACAATATTTT
TTCTTTTACATCTTCCTTCTTATTTGGCTCCAGAAGAGACTCCTGACGAT
TGGGCCTAGAGCCGTGGGCTTGGGATTCCTTTGGGGTCACTTATCAGATA
TTTACACTATAATTCATAACAGCAGCAAAATTACAGTTATGGAAGTAGCA
ACAAAATAACGTTATGGTTGGGGGGGGTCATCACAACAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGATGTACACTCATGTGTCCCACA
TGGGATTCCAGATGTGCATTCATGCCTCCCACATGGGATTCCAGATGTGC
ATTCATGTGTCCCACATGGGATTCCAGATGTGCATTCATGTGTCCCACAT
GGGATTCCATCTCAGGTTGTGATGCTTGCACAGTAGATGCTGCAGCCAAT
GAGCCATCTCCCCAGTGCCTAAGATATATTCGTAATTGAAGATACCTTGC
TAAAGCATTTCAGAGGGAGGAAGAGGAAAATTGCCTCAGTCTGGAATATT
ATGTAATGATCCTATTGTTTTTGCCCGCCTCCCTGTAAATTTATAAAATG
GAAAATACTCATAAATTTCAGTGGCAATAACAGTCTTGTGGGAATGAAGA
ACCTGGATGAGACATGTCACTAGAAAGCCTTCTTCAAGGAGGGCAGACTA
TGGAACTGTTGCTCTCTGTCAGCCCTTCCCTCTCTTTACTGGGAAAGTAT
TATATCTAAGTACACTGTAGCTATCTTCAGATGCACCAGAAGAGGGCGTC
AGATTTCATTACAGATGGTTGAGAGCCACCATGTGGTTGCTGGGATTTGA
ACTCAAGACCTTCGGAAGAGCAGACTGTGCTCTTAACCACTGAGCCATCT
CTCCAGCCCCTCCTCCATGGTTTCTTATTCATT

Query= MSMg01no234_e13.b1 MSMg01no234_e13.b1 CHROMAT_FILE:
MSMg01no234_e13.b1 PHD_FILE: MSMg01no234_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:13 2005
         (694 letters)



>mm_chr1_52137959_52139052
          Length = 1094

 Score = 1274 bits (659), Expect = 0.0
 Identities = 681/689 (98%), Gaps = 2/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcgaattccttcttttgatgtcagcctttacatctttttttgctttctatccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaattcctcgaattccttcttttgatgtcagcctttacatctttttttgctttctatccc 737

                                                                       
Query: 65  caaatccccaaggtaccccatagtgtgcttatgtctgtgggtcccatgcagctgcaaata 124
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 736 caaatccccaaggtatcccatagtgtgcttatgtctgtgggtcccatgcagctgcaaaca 677

                                                                       
Query: 125 tatccagtcattcacttacctactcattcaggcatgcatccatcccacgccttatacact 184
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 676 tatccagccattcacttacctactcattcaggcatgcatccatcccacaccttatacact 617

                                                                       
Query: 185 cactcaacatataccgagctcctcatgtgcattgaatagaaactcagatacctgaaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cactcaacatataccgagctcctcatgtgcattgaatagaaactcagatacctgaaaatt 557

                                                                       
Query: 245 catgtagcaaagattggctaagggagaaagctgtccatggctatgtgtaaaagaaaagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 catgtagcaaagattggctaagggagaaagctgtccatggctatgtgtaaaagaaaagaa 497

                                                                       
Query: 305 tccagatcatcagatgatatgtatatagtatggaggaaaccagagctcatccacggccca 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tccagatcatcagatgagatgtatatagtatggaggaaaccagagctcatccacggccca 437

                                                                       
Query: 365 ggcaaagctgtgcatgcaacgaaacaaagggcccttaaaatcttgcatgaaacacaaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggcaaagctgtgcatgcaacgaaacaaagggcccttaaaatcttgcatgaaacacaaagt 377

                                                                       
Query: 425 tggttccagagcagtgtgtatgaagtgtaagattggtagtagatggtgaagagggtggtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tggttccagagcagtgtgtatgaagtgtaagattggtagtagatggtgaagagggtggtc 317

                                                                       
Query: 485 tcagaatatggacaatattttttcttttacatcttccttcttatttggctccagaagaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcagaatatggacaatattttttcttttacatcttccttcttatttggctccagaagaga 257

                                                                       
Query: 545 ctcctgacgattgggcctagagccgtgggcttgggattcctttggggtcacttatcagat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctcctgacgattgggcctagagccgtgggcttgggattcctttggggtcacttatcagat 197

                                                                       
Query: 605 atttacactataattcataacagcagcaaaattacagttatggaagtagcaacaaaataa 664
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 196 atttacactataattcataacagcagcaaaattacacttatggaagtagcaacaaaataa 137

                                        
Query: 665 cgttatggttggggggggtcatcacaaca 693
           ||||||||||  |||||||||||||||||
Sbjct: 136 cgttatggtt--ggggggtcatcacaaca 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)