CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTCTTCTTTCCAGTGGTCTATGTCAGGTATTTCTGTGACAGCA
GTACGATAGTCACCAATGTGGCAATCATTCCTAAGAGTTAAATCTCAAGT
TTAGAGATAGTGGGTTGAAGAAGAGTCAGATGAATTTTATCTACTATACT
AATGGAACATTGGATCCCGAGACAGGTCTCTGCGCAGAAGTGAGTTTTCA
GATGCTTCAGTTGGTCCGCACTACTGCTGGCTCGACTCTGCCCATCTCAA
TGTACTCTGGCAGCTGCATGGTGGAGTTGTTTTGAATGAGTCCCTGGTCT
CCCAGAAGTCTGTGGAAACATAGGCTTTGTTTCCCATCCTGCAAGAGAAG
GGTAGTATGGGAAACTTCTCAAGCCTTAGGAAGACAAAGAATTTGATTGC
AAACATAATATATGCCCACAAAACATGATATTTAAAGTAGAAAACAGAAA
AAAATAACCCATTTCTCTTTTTGTCCAGTGTCATGGTTCATTCCCCAATG
TGTTTTCTGAGCTCTTCTTAGATCCAACTGTGGCCATTTTGTTTACATAC
TTTTGTAATTTTGCTTAACATAAGATCAAAAGTATTTCTGGAGTTAGAAG
TTTTACTGACCACTTGAAATGATTTGAAATGAAGCAGCCTGTTAATATAT
ATTCTGTTTACAAATGTGATATATTGTTAGATATTAAGGAATTTTGCTTG
T

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGTTCAGCATCCTTAATCATCAGAGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTTACAAAAGTCAGAATGGC
TAAGATTAAAAATTCAAGTGACAGCAGATGTTGGCAAGGATGTGGAGAAA
GAAGTACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAGTCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCACCTGGGCATATATCCAGAAGATGTCCTAACTG
GTAATAAGAACACATGCTCCATTATGTTCATAGCAGGCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTATACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGTATCATC
CTGAGTGTGGTAACCCAATCACAAAAGAACTCACATGATATGCACTCACT
GATAAGTGGATATTAGCTGAGAAACTTAGAATACCCAAGATACAGGGTCC
TTTCAATAAAATCTTGCTAGTATATGCAATGGTGTCAGCGTTTGGATGCT
GATTATGGGGTAGATCCTGGGGATATGGCAGTCTCTACATGGTCCATCCT
N

Query= MSMg01no234_f07.b1 MSMg01no234_f07.b1 CHROMAT_FILE:
MSMg01no234_f07.b1 PHD_FILE: MSMg01no234_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:17 2005
         (706 letters)



>mm_chr1_185925738_185926843
          Length = 1106

 Score = 1295 bits (670), Expect = 0.0
 Identities = 694/702 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttcttctttccagtggtctatgtcaggtatttctgtgacagcagtacgatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttcttctttccagtggtctatgtcaggtatttctgtgacagcagtacgatag 264

                                                                       
Query: 65  tcaccaatgtggcaatcattcctaagagttaaatctcaagtttagagatagtgggttgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaccaatgtggcaatcattcctaagagttaaatctcaagtttagagatagtgggttgaa 324

                                                                       
Query: 125 gaagagtcagatgaattttatctactatactaatggaacattggatcccgagacaggtct 184
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 325 gaagagtcagatgaattttatctactatactaatggaacattagaccccgagacaggtct 384

                                                                       
Query: 185 ctgcgcagaagtgagttttcagatgcttcagttggtccgcactactgctggctcgactct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcgcagaagtgagttttcagatgcttcagttggtccgcactactgctggctcgactct 444

                                                                       
Query: 245 gcccatctcaatgtactctggcagctgcatggtggagttgttttgaatgagtccctggtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcccatctcaatgtactctggcagctgcatggtggagttgttttgaatgagtccctggtc 504

                                                                       
Query: 305 tcccagaagtctgtggaaacataggctttgtttcccatcctgcaagagaagggtagtatg 364
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 505 tcccagaagtctgtggaaacataggttttgtttcctatcctgcaagagaagggtagtatg 564

                                                                       
Query: 365 ggaaacttctcaagccttaggaagacaaagaatttgattgcaaacataatatatgcccac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaaacttctcaagccttaggaagacaaagaatttgattgcaaacataatatatgcccac 624

                                                                       
Query: 425 aaaacatgatatttaaagtagaaaacagaaaaaaataacccatttctctttttgtccagt 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 625 aaaacatgatatttaaagtagaaaacagaaaaatataacccatttctctttttgtccagt 684

                                                                       
Query: 485 gtcatggttcattccccaatgtgttttctgagctcttcttagatccaactgtggccattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtcatggttcattccccaatgtgttttctgagctcttcttagatccaactgtggccattt 744

                                                                       
Query: 545 tgtttacatacttttgtaattttgcttaacataagatcaaaagtatttctggagttagaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtttacatacttttgtaattttgcttaacataagatcaaaagtatttctggagttagaa 804

                                                                       
Query: 605 gttttactgaccacttgaaatgatttgaaatgaagcagcctgttaatatatattctgttt 664
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gttttgctgaccacttgaaatgatttgaaatgaagcagcctgttaatatatattctgttt 864

                                                     
Query: 665 acaaatgtgatatattgttagatattaaggaattttgcttgt 706
           || ||||||||||||||||||| |||||||||||||||||||
Sbjct: 865 actaatgtgatatattgttagaaattaaggaattttgcttgt 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)