CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTCTTCTTTCCAGTGGTCTATGTCAGGTATTTCTGTGACAGCAG
TACGATAGTCACCAATGTGGCACTCATTCCTAAGAGTTAAATCTCAAGTT
TAGAGATAGTGGGTTGAAGAAGAGTCAGATGAATTTTATCTACTATACTA
ATGGAACATTGGATCCCGAGACAGGTCTCTGCGCAGAAGTGAGTTTTCAG
ATGCTTCAGTTGGTCCGCACTACTGCTGGCTCGACTCTGCCCATCTCAAT
GTACTCTGGCAGCTGCATGGTGGAGTTGTTTTGAATGAGTCCCTGGTCTC
CCAGAAGTCTGTGGAAACATAGGCTTTGTTTCCCATCCTGCAAGAGAAGG
GTAGTATGGGAAACTTCTCAAGCCTTAGGAAGACAAAGAATTTGATTGCA
AACATAATATATGCCCACAAAACATGATATTTAAAGTAGAAAACAGAAAA
AAATAACCCATTTCTCTTTTTGTCCAGTGTCATGGTTCATTCCCCAATGT
GTTTTCTGAGCTCTTCTTAGATCCAACTGTGGCCATTTTGTTTACATACT
TTTGTAATTTTGCTTAACATAAGATCAAAAGTATTTCTGGAGTTAGAAGT
TTTACTGACCACTTGAAATGATTTGAAATGAAGCAGCCTGTTAATATATA
TTCTGTTTACAAATGTGATATAT

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGTTCAGCATCCTTAATCATCAGAGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTTACAAAAGTCAGAATGGC
TAAGATTAAAAATTCAAGTGACAGCAGATGTTGGCAAGGATGTGGAGAAA
GAAGTACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAGTCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCACCTGGGCATATATCCAGAAGATGTCCTAACTG
GTAATAAGAACACATGCTCCATTATGCCCCTCAGCAGGCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATTTATACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGTATCAT
CCTGAGTGTGGTAACCCTATCACAAAAGAACTCACATGATATGCACTCAC
TGATAAGCGGATATTAGCTGAGAAACTTAGAATACCCAAGATACAGGGTC
CTTTCAATAAAATCTTGCTAGTATATGCAATGGTGTCAGCGTTTGGATGC
TGATTATGGGGTAATCCTTGGG

Query= MSMg01no234_g07.b1 MSMg01no234_g07.b1 CHROMAT_FILE:
MSMg01no234_g07.b1 PHD_FILE: MSMg01no234_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:22 2005
         (679 letters)



>mm_chr1_185925738_185926816
          Length = 1079

 Score = 1243 bits (643), Expect = 0.0
 Identities = 667/675 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttcttctttccagtggtctatgtcaggtatttctgtgacagcagtacgatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttcttctttccagtggtctatgtcaggtatttctgtgacagcagtacgatag 264

                                                                       
Query: 65  tcaccaatgtggcactcattcctaagagttaaatctcaagtttagagatagtgggttgaa 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaccaatgtggcaatcattcctaagagttaaatctcaagtttagagatagtgggttgaa 324

                                                                       
Query: 125 gaagagtcagatgaattttatctactatactaatggaacattggatcccgagacaggtct 184
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 325 gaagagtcagatgaattttatctactatactaatggaacattagaccccgagacaggtct 384

                                                                       
Query: 185 ctgcgcagaagtgagttttcagatgcttcagttggtccgcactactgctggctcgactct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcgcagaagtgagttttcagatgcttcagttggtccgcactactgctggctcgactct 444

                                                                       
Query: 245 gcccatctcaatgtactctggcagctgcatggtggagttgttttgaatgagtccctggtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcccatctcaatgtactctggcagctgcatggtggagttgttttgaatgagtccctggtc 504

                                                                       
Query: 305 tcccagaagtctgtggaaacataggctttgtttcccatcctgcaagagaagggtagtatg 364
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 505 tcccagaagtctgtggaaacataggttttgtttcctatcctgcaagagaagggtagtatg 564

                                                                       
Query: 365 ggaaacttctcaagccttaggaagacaaagaatttgattgcaaacataatatatgcccac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaaacttctcaagccttaggaagacaaagaatttgattgcaaacataatatatgcccac 624

                                                                       
Query: 425 aaaacatgatatttaaagtagaaaacagaaaaaaataacccatttctctttttgtccagt 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 625 aaaacatgatatttaaagtagaaaacagaaaaatataacccatttctctttttgtccagt 684

                                                                       
Query: 485 gtcatggttcattccccaatgtgttttctgagctcttcttagatccaactgtggccattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtcatggttcattccccaatgtgttttctgagctcttcttagatccaactgtggccattt 744

                                                                       
Query: 545 tgtttacatacttttgtaattttgcttaacataagatcaaaagtatttctggagttagaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtttacatacttttgtaattttgcttaacataagatcaaaagtatttctggagttagaa 804

                                                                       
Query: 605 gttttactgaccacttgaaatgatttgaaatgaagcagcctgttaatatatattctgttt 664
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gttttgctgaccacttgaaatgatttgaaatgaagcagcctgttaatatatattctgttt 864

                          
Query: 665 acaaatgtgatatat 679
           || ||||||||||||
Sbjct: 865 actaatgtgatatat 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)