BAC Information

Click to search

BAC

Clone NameMSMg01-234I01
Chromosome1 (Build37)
Map Location 132,553,050 - 132,719,976
singlet/doubletdoublet
Overlap geneC4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2, Cd55, Zp3r
Downstream genePigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234I01.T7 (MSMg01no234_i01.b1)MSMg01-234I01.TJ (MSMg01no234_i01.g1)
ACCAG400372AG400373
length712692
length of high quality
(start - end)
236 (129 - 364)205 (58 - 262)
definitionCHROMAT_FILE: MSMg01no234_i01.b1 PHD_FILE: MSMg01no234_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:30 2005CHROMAT_FILE: MSMg01no234_i01.g1 PHD_FILE: MSMg01no234_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,719,742 - 132,719,976)(132,553,050 - 132,553,254)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGTCTTTGTGCCTTATCATCCTCAATCCATAATAGTGTTATAAAAC
TCAGCATGTGTAAGGTATTTGCCCTTAACAGACGCTCATCATTCAGTGTC
AAAAATGGGCCAGAACAGGGACTCAAAACTAAGAGTAATTCTGCACTGAA
CAACGAAGAGATCCATGGGCACAGATGTGGAATGATGTCCAAGTGTATTT
TGAAAGGAGGTGGCAGAGACAGGTCTATAACCAAGATCTGCCACCCAACC
CTACCCCTGCTGCTTACCAATGCCTTCACATTAAGAATGACCATGTTGAG
TTACATTTCCATATTTTTTCTACGCCCCCCCCTCTCCCATTTACCCATTT
GTTTGATCCAGTGGACTGTAGAAGGCCAAGCCAACACAGATCCAATCATT
AGCTTCATTCATTAAGCCTATGGTTTGATCCAATCCCTGATGGAGAAGGA
TTTCCCTTTCTTCCTTTGCATGGCCCATCTGTTACCAGCCTGGAGTTTTG
ACCTGGTTCATTTTTCTCTGCCAGCTATAGAATTACAAGGCTAGGAAAAC
GTCCTATACCCAGTAGCCAACCAGTGCAGAAAGACGTTTATTATGCATGA
CGAGATACCTACCGTGTAAGACACATCGAGGGAAAGACCCTACTTATCTA
AGACTGGACAGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAGTCCACATTGGGCTACATAGAAGAAAAAGCAGAATTCTTGA
GGTGTAATACTCTTAATACTACTTCCCCTATTAGAAATGAATGGTGATAC
ACAGCTAAGTTGCCATTTAAGAACCCAGTGGAGGGCTGGAGAGATGGCTC
AGCAGTTAAGAGCACTGACTGCTCTTCTAGAGGCCCTGAGTTCAATTCCC
AGCAACCACATGGTAGCTCACAACTATCTGTAATGGGATCCGGTGCCCTC
TTCTGGTGTGTCTGAAGACAGCAACAGTGGATTCACATACATTACTTTTT
TTTTTCCCNNACTTTGCTTTGTTTAANAAAAAACAATTTTCACCATTGAC
CCCAGCCGGAAAAATACTACAATGCTTCTTCGTTGCGGATCAACTCCCAT
CCCATGCTGCTAATTGTGTCCTGTCGCTGTTAGACAATATACATCCCCTT
CAGATCCTGTCTGGCACACTCGTGCCCTTGTATACTTATTTCCCACATTC
CAGATTACCCCCTTACAATTTGCCCCCGTTGCGTGTGACTTTAACCCCTA
CTTGGCCTAACATACTCTTTATTGGTCGAAACCGGACCCTTGTTTAATTT
TTCTCATTTCACACCTTTAACCCCTTGCACGTTTATTGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_i01.b1 MSMg01no234_i01.b1 CHROMAT_FILE:
MSMg01no234_i01.b1 PHD_FILE: MSMg01no234_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:30 2005
         (236 letters)



>mm_chr1_132719542_132720177
          Length = 636

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacgctcatcattcagtgtcaaaaatgggccagaacagggactcaaaactaagagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 435 cagacgctcatcattcagtgtcaaaaatgggccagaacagggactcagaactaagagtaa 376

                                                                       
Query: 61  ttctgcactgaacaacgaagagatccatgggcacagatgtggaatgatgtccaagtgtat 120
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 375 ttctgcactgagcaacgaagagatccatgggcacagatgtggaatgatgtccaagtatat 316

                                                                       
Query: 121 tttgaaaggaggtggcagagacaggtctataaccaagatctgccacccaaccctacccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttgaaaggaggtggcagagacaggtctataaccaagatctgccacccaaccctacccct 256

                                                                  
Query: 181 gctgcttaccaatgccttcacattaagaatgaccatgttgagttacatttccata 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gctgcttaccaatgccttcacattaagaatgaccatgttgagttacatttccata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no234_i01.g1 MSMg01no234_i01.g1 CHROMAT_FILE:
MSMg01no234_i01.g1 PHD_FILE: MSMg01no234_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:30 2005
         (205 letters)



>mm_chr1_132552850_132553454
          Length = 605

 Score =  381 bits (197), Expect = e-110
 Identities = 203/205 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtccacattgggctacatagaagaaaaagcagaattcttgaggtgtaatactcttaat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aagtccacattgggctacatagaagaaaaagcagaattcttgaggtataatactcttaat 260

                                                                       
Query: 61  actacttcccctattagaaatgaatggtgatacacagctaagttgccatttaagaaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actacttcccctattagaaatgaatggtgatacacagctaagttgccatttaagaaccca 320

                                                                       
Query: 121 gtggagggctggagagatggctcagcagttaagagcactgactgctcttctagaggccct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gtggagggctggagagatggctcagcagttaagagcactgactgctcttctagaggtcct 380

                                    
Query: 181 gagttcaattcccagcaaccacatg 205
           |||||||||||||||||||||||||
Sbjct: 381 gagttcaattcccagcaaccacatg 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)