BAC Information

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BAC

Clone NameMSMg01-234J17
Chromosome1 (Build37)
Map Location 26,102,566 - 26,102,895
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234J17.T7 (MSMg01no234_j17.b1)MSMg01-234J17.TJ (MSMg01no234_j17.g1)
ACCAG400443AG400444
length1,314719
length of high quality
(start - end)
---330 (387 - 716)
definitionCHROMAT_FILE: MSMg01no234_j17.b1 PHD_FILE: MSMg01no234_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:38 2005CHROMAT_FILE: MSMg01no234_j17.g1 PHD_FILE: MSMg01no234_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATACGTTTNACCTATNCTATCACNCTNATTAGGTGTACAGACTCTCGTA
TGGTTGCGGGAGACTAAGACCTCTATCTCACCTACGTTACCACGTCATCT
CTATACATCACCAACTCACACATGACGCCTCAGGCAGTCAAGTGGGTATT
AGCATCGTACCCGATTCGTACACCTGCGCGTTGACGCAGTACGCATCCAT
TCTCGCTTCCTGTCCACACGCCCCTCGCGCTTGGCTTCTGTCTCTCCTCA
CTACCCGTCCCGTCGCCTGGCGGCTTCGTGTGCCTCCTGCCCACCATATG
GCTAGATCCTCATTCCGCGCCGCGCGGCGCGCATGAGTCGAGGAGGTACC
GCCGTCATGTTGGTGCGCGAATGCGACATACGCACGCGTGCGTGAGCGGT
GGGGGCGGAACCTATACTCTCAACGTATGCTAACGTCTCTTGTATAAAGG
CTACACTATTACGGTGCCACTGAGCCGCGCGTGGTGTCGGGGCGTTGCGG
GGAGGCTCGAATGTGTAGAGTCTTCAACCTCTCTCACACCTTGCTCACTA
CTCGATCACGACCACCGTAGATATGGCGGGGTGCGTCGTCTACGTCTCGC
GCGAGCAGCGAGATACTAGTAGGACGGCGCGGGGGCGCGCGCACGCTGGT
GGGTGCGCGACGCGAGTATCCGCCCTAGTGTGTGTAGCAGATGTACTGGA
CGACTATTCATACACTCAGCGCGCGCATTGCCTTCCTACACAGATCTCAC
GGCGAGCGCGATGCTTACTGTAACGCAACCGTGCTCTCCTCTCCACCACG
TGGACGCGTGGGATGCGCTATGATGCGTGCGTGGTGGGCGCGCTAGCCGG
AGGCTACGAGAGCGTGGCTGCGCGCTAGATGTGGTTCTTTCTACGCGCAC
GCGCCCTGCGTATAGCTAGGTGCGCCACGCTGCACGCGTCGCACCACATG
CGGGCGCTGGCGCGCCGATATACACTGCGGCGTGCTCGGGAGCGCACTGC
CGTCTCGATCCATCTGTCGCATCGTTAACCACGCGCCCACTCGATCCGCG
ACATAATATACACAGCTGTAACGCGCTGTAACATCGTGCGGGTCTAAAGA
TGTTCGCGAATATACTCACCGACTCACGCGCGCATGATGGTGGAGACGCT
GCGAGTACGGACGCGGGACAGCTACGAGAGATTCGCACATACGCAAGGGC
AAGTGCGTCGTGTCGCGCGCAGGGCGTGTACTGCAGAGCGAGTCGCGATG
TGCAACATCGCAGCGATGCAGCGATGAGATAAGTGTCGCNTGCCTCCTCC
TCACCGACACTGTN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAATGGGAGGGGCTCTTGTT
ATACTAAACTGTAAAGCTGGTAATTGCAATTAGAGTTCAAAAGTTTGAGA
AAAACTTTTATTACACTGCCTGTTCTTAGACCTCATACACAAAGGTCTGT
GGTCTACAAGAGTTTTATTATAGAATAATAGTGTGTGCTCAGACCTTCAA
TAAAAAATAGATTACATGTCCTACTATAGCAATATTATTCATAGTTAATG
ATGCTGTGATCAAATGCCCTTTGAATCTTGATATTTTTCTTAATTTGTTT
TACATATTATATTAATTTATATAATGCCCCCCCGACATTATATATAGAGA
AAAGAAAGTGCAAGGGAGAATTCTTAACCCAAAGTAGATCTCAATCATAA
TCTATTTCTTCCATCTCCTACATAAAGAATTTTCTTTTTTGTTCATTTTC
AAAGAACAGGGGCTTGGATCTTCCTCTATAAAATGTGTTCATGTGTTAAA
AAAACATAACTGATGTGACAAATGATATGTGACACATAATTCATAGATTA
TTAGGAAAATATATCATTTCATCTGACATTGGCTTTGACCATATGCAGGC
TCTGCTCTAACATGCTTGTGCAACAAATTGTTGTCTTTGCCTTGTATGCA
AATGCTGGCTGGCCAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_j17.g1 MSMg01no234_j17.g1 CHROMAT_FILE:
MSMg01no234_j17.g1 PHD_FILE: MSMg01no234_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:38 2005
         (330 letters)



>mm_chr1_26102366_26103095
          Length = 730

 Score =  623 bits (322), Expect = 0.0
 Identities = 328/330 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatatatagagaaaagaaagtgcaagggagaattcttaacccaaagtagatctcaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatatatagagaaaagaaagtgcaagggagaattcttaacccaaagtagatctcaatc 260

                                                                       
Query: 61  ataatctatttcttccatctcctacataaagaattttcttttttgttcattttcaaagaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ataatctatttcttccatctcctacataaagaattgtcttttttgttcattttcaaagaa 320

                                                                       
Query: 121 caggggcttggatcttcctctataaaatgtgttcatgtgttaaaaaaacataactgatgt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggggcgtggatcttcctctataaaatgtgttcatgtgttaaaaaaacataactgatgt 380

                                                                       
Query: 181 gacaaatgatatgtgacacataattcatagattattaggaaaatatatcatttcatctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaaatgatatgtgacacataattcatagattattaggaaaatatatcatttcatctga 440

                                                                       
Query: 241 cattggctttgaccatatgcaggctctgctctaacatgcttgtgcaacaaattgttgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattggctttgaccatatgcaggctctgctctaacatgcttgtgcaacaaattgttgtct 500

                                         
Query: 301 ttgccttgtatgcaaatgctggctggccaa 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 ttgccttgtatgcaaatgctggctggccaa 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)