Query= MSMg01no234_j18.b1 MSMg01no234_j18.b1 CHROMAT_FILE:
MSMg01no234_j18.b1 PHD_FILE: MSMg01no234_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:38 2005
(338 letters)
>mm_chr1_180157374_180158111
Length = 738
Score = 542 bits (280), Expect = e-158
Identities = 303/314 (96%), Gaps = 7/314 (2%)
Strand = Plus / Plus
Query: 29 gaattctctctctctcctcgatggtgaacaaggtctgtaaaagctgttgacagtcattcc 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gaattctctctctctcctcgatggtgaacaaggtctgtaaaagctgttgacagtcattcc 287
Query: 89 aagtaggctaagaa----ccccatcagggactctaccaagcctgtaaggccaacaggatt 144
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aagtaggctaagaaagaac---atcagggactctaccaagcctgtaaggccaacaggatt 344
Query: 145 ttctggaaaaggagggtgattaatcttctagttataaagatcagaggaagaaaagggcca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttctggaaaaggagggtgattaatcttctagttataaagatcagaggaagaaaagggcca 404
Query: 205 atattataagagttgtaaggcattctgatcagatgagggtggcccaacagccctaagggg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atattataagagttgtaaggcattctgatcagatgagggtggcccaacagccctaagggg 464
Query: 265 aaggaccatggtgtagttgaccggtccttcaggggtgtcttttcttcggctcctcgttcc 324
||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |||||
Sbjct: 465 aaggaccatggtgtagttgaccggtccttcaggggtggctcttcatcggctccttgttcc 524
Query: 325 tgtcgagggacctc 338
||||||||||||||
Sbjct: 525 tgtcgagggacctc 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_j18.g1 MSMg01no234_j18.g1 CHROMAT_FILE:
MSMg01no234_j18.g1 PHD_FILE: MSMg01no234_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:38 2005
(286 letters)
>mm_chr1_180257764_180258449
Length = 686
Score = 553 bits (286), Expect = e-162
Identities = 286/286 (100%)
Strand = Plus / Minus
Query: 1 ttcccttcccctccccccaagactgcttttaacatttatgaggggcaaaggtactggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttcccttcccctccccccaagactgcttttaacatttatgaggggcaaaggtactggctg 427
Query: 61 ggagaagttaatgttcagttgaccatgtttatgaaatgtgagtggctgtcctcacctgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggagaagttaatgttcagttgaccatgtttatgaaatgtgagtggctgtcctcacctgat 367
Query: 121 aatagacatataatacatgaaactttgggaacagatgcttttagaagccatcatgcaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aatagacatataatacatgaaactttgggaacagatgcttttagaagccatcatgcaagc 307
Query: 181 cagtcattgatttcactactacacaatgctgctaacttaactagctatgtgataaattag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagtcattgatttcactactacacaatgctgctaacttaactagctatgtgataaattag 247
Query: 241 atcccctaattgtaattttattgggtttgcacagaacacttaaatc 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atcccctaattgtaattttattgggtttgcacagaacacttaaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
