BAC Information

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BAC

Clone NameMSMg01-234K16
Chromosome1 (Build37)
Map Location 63,598,754 - 63,634,462
singlet/doubletdoublet
Overlap geneAdam23
Upstream genePard3b, LOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638
Downstream geneGm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234K16.T7 (MSMg01no234_k16.b1)MSMg01-234K16.TJ (MSMg01no234_k16.g1)
ACCAG400482AG400483
length737730
length of high quality
(start - end)
213 (466 - 678)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no234_k16.b1 PHD_FILE: MSMg01no234_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:42 2005CHROMAT_FILE: MSMg01no234_k16.g1 PHD_FILE: MSMg01no234_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,634,250 - 63,634,462)(63,598,754 - 63,598,986)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCAAAGAGTATTTTTTTTTTATTTTCCTTTTTGGCAATTCTAC
AACTTTGCATATGGAAATCTTGTGCACATTAACCAAATGCTTCAGGCTCA
GCTATTTGACTAAAAAGAAACAACCTTAATTAATGTTATTTTTAGATCAC
AATAATTTTCATACATTAGCATAACCTTACTACATGGAAAGTGCACCCAC
TCACACATATCCACATGTTCTCCCAAAGTAATACCTTTTAGCACCTACTT
CAGAAGAAGAGTGCTCTCAGGGAAAGAATCAGAAAGGCAATGTCAGCATA
GTGGAGTTTCTTGCTTGTATTTGAATACCTGTGCCGGTCAAGGATGGTTA
GGACCCTCTTCCTCATCTACATTACTCAGCATGTCGCATCTAAAGGACGG
TGACACTAAAGAAGGCCCCCATCAGATGTACCTGTTCCTTTCATCTCAAG
ATTCCAGCTCTCAAGGGCTGCAGGCATCTTTCACACTCTACTTCTGGGAA
TAGTGCCCCAGTTTCAGGAAGGATTCCCAATAGTGCTGTCTAAAAACCAT
CTTTTTTACCACTATTTCCAATTGCTGCTTCTAAGGGAAACTGGTTTTAT
TTACACTGAATTCAGTGAAGCTCTGAAGGACAACCAACCCAGTACTTCTA
AATTATCTCTAATTGTCTTCGAAACTGTCCAAGTGGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATGTTGGTGTTTTCATTTTTCTGCTAA
GACATAGGGAGTCAGAATGGAACCAACTTTTCCTTGGATCACTTCTTTGC
TAAGTCTCATTTAACCTTGGCATTCCTTCTGGAGACGTAGTTTTCTCCTC
CCGAAAGTTTCTCCTACCATCCAGCTCCAACTCCTCCACTCTCTGGGGTG
ATCTGGTCCCAGGCAGAAAGCATTACTGATGTCAGCCAAGCAAAAAGTGG
TCTTGGTCTAACATTTGCTTTTTTTATAAATACCTCAAGTATTTCTACTA
CATAGTTCTTTNCTGCGGCCCGANACCGNTGCCCATGGNGTTTCATAAGA
GTATGTATAAACAAAATTGCAAAAATNCAGCNAAAACTTAGGGAGGGGTA
TACATTTCCAGAAGAGATTTTTAGGAGTTTTCAGAAAACACATTTGACAG
TAAAATTAAATTTTGAAAATCTTCTTTTGGCCCTCATGATATAAATATTT
ATTTCTTGCTGTAAGAAGCATGAAATTGTTTGATTATAAGATATGCTCCA
GTTCCCTTGACATAGAACACAACCAATCATCACACTTTCCTAAAGTTCAG
CATAGGTAGCATTCTCCAGCTGACAGGCTAACACTTTTGCAGAAGGCGCT
GTGGTTTTATAGGAGCATGTTTGGAAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_k16.b1 MSMg01no234_k16.b1 CHROMAT_FILE:
MSMg01no234_k16.b1 PHD_FILE: MSMg01no234_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:42 2005
         (213 letters)



>mm_chr1_63634050_63634662
          Length = 613

 Score =  381 bits (197), Expect = e-110
 Identities = 209/213 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccccatcagatgtacctgttcctttcatctcaagattccagctctcaagggctgcaggc 60
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 413 cccccatcagttgtacctgttcctttcatctcaagtttccagctctcaagggctgcaggc 354

                                                                       
Query: 61  atctttcacactctacttctgggaatagtgccccagtttcaggaaggattcccaatagtg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 353 atctttcacactctacttctgggaatagtgcctcagtttcaggaaggattcccaatagtg 294

                                                                       
Query: 121 ctgtctaaaaaccatcttttttaccactatttccaattgctgcttctaagggaaactggt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 293 ctgtctaaaaaccatcttttttacaactatttccaattgctgcttctaagggaaactggt 234

                                            
Query: 181 tttatttacactgaattcagtgaagctctgaag 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tttatttacactgaattcagtgaagctctgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no234_k16.g1 MSMg01no234_k16.g1 CHROMAT_FILE:
MSMg01no234_k16.g1 PHD_FILE: MSMg01no234_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:42 2005
         (234 letters)



>mm_chr1_63598554_63599187
          Length = 634

 Score =  412 bits (213), Expect = e-120
 Identities = 228/233 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttccttggatcacttctttgctaagtctcatttaaccttggcattccttctggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttccttggatcacttctttgctaagtctcatttaaccttggcattccttctggaga 260

                                                                       
Query: 61  cgtagttttctcctcccgaaagtttctcctaccatccagctccaactcctccactctctg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagttttctcctcccgaaagtttctcctaccatccagctccaactcctccactctctg 320

                                                                       
Query: 121 gggtgatctggtcccaggcagaaagcattactgatgtcagccaagcaaaaagtggtcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtgatctggtcccaggcagaaagcattactgatgtcagccaagcaaaaagtggtcttg 380

                                                                
Query: 181 gtctaacatttgctttttttataaatacctcaagtatttctactacatagttc 233
           |||||||||||||   || ||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctaacatttgcaagttctataaatacctcaagtatttctactacatagttc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)