BAC Information

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BAC

Clone NameMSMg01-234N21
Chromosome1 (Build37)
Map Location 50,645,228 - 50,747,131
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234N21.T7 (MSMg01no234_n21.b1)MSMg01-234N21.TJ (MSMg01no234_n21.g1)
ACCAG400622AG400623
length730734
length of high quality
(start - end)		349 (380 - 728)348 (387 - 734)
definitionCHROMAT_FILE: MSMg01no234_n21.b1 PHD_FILE: MSMg01no234_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:59 2005CHROMAT_FILE: MSMg01no234_n21.g1 PHD_FILE: MSMg01no234_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,746,783 - 50,747,131)(50,645,228 - 50,645,575)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCATGATCTTTTGATTGTACTGTATCATACACAGGTCAATAGT
TAATCTATTACTCATCGAATTCCCCTTTGGGGAACCATTTGACTTATCAA
GGTTACTTAATTTCCAGTCTAACTTTAAGTGCTTGTTAAGCAAATATTAC
TATTAGTAAAGCAAAATAACTAAAAGCAAGCTACTAAATACTAGATATTT
CAAGTCCAATTGAACTTTTCTTTAAAGTAAAAATGTATAAGATTTCACAA
TGAATTTTAAGTACTTATCTTCTCTCTGCCAGTTTAATTATTATTATTTT
ATTTAATAAAAATATTTTGCATATACCGACTGCTTTTCTACAGGTAGAAA
ATGTTATTATAGCTTTTAAATTTTCTCAATCAAAACTGATGGACAGAGTA
GGATTGATTTCTTTTTCCTCCACTTATTCCAGAGAATTATCTTACGTGAA
ATGGTTTTTAAACAATTACTAACTTGTGTCTTTCGGGGCTTTTATTAATA
AAATATTTTGTTTTATAATATCTATTTGAAATTGTGCCATTTTCCTGGCT
TTACTCCATCTCAAATTTTGCCTCCTTCTGTTCTTCACAGGCTGGTGACG
GGGAACCAGCACCTGAACTACATGAAGCAATTTGGAGGGGTGCGTGCTTC
TCTGGACAGTATAGAAAAGTGTGGGATTGC

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTTTTTTCTCAAAAATGTTCTC
AGTCTTCTTTAATTTCCTCGGTAGGCCTTATTGTCCACACATTCCTAACT
TTTGTTCAACAGTATGATTTGTTTGGATAATAGTTTGGGGGATAATATAC
ACCCAGAATACTGTTGAAATGTTTGTATAATGCAGTGCAAGATTCTCATG
AGGATTGGCTCTTACATTTGTCTATGACTTGGAATGAGAACATGTTGGCA
CACGCTACATGTATCATGAGCGACCTGCAACTTAACATCATAATTGGAAA
CATCAATCCATTGGTTCTTTTATATCCCCCCCCGCACCAGCATTTCATGC
TATTCATATCATATGTAAGTTTGATATTAAGTTAAAAATATTATAGAGGC
TCCTATTCCTGAAAAATTGTAAGAAGTGGGACTGGTTTCAGGATGAACAG
TGAGTGACAAGCACATTTTTATAAGAACTGTGAATAAAAGATAAGATGAT
GAAGGAAAAAATGTTACCTAATTTAAAATATAGTGCCAAAATATTTGCCA
AAATAATCTTGCTGCAATTTAACAAATTTAAAAGTTTGAATTTATAAATT
TGGCCATAATCCTTTATGATCCAAATATTTAAAATGTGCTAACTTACTTT
TGGTATGCTAATACTCTATTATCAAAGTATAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_n21.b1 MSMg01no234_n21.b1 CHROMAT_FILE:
MSMg01no234_n21.b1 PHD_FILE: MSMg01no234_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:59 2005
         (349 letters)



>mm_chr1_50746391_50747139
          Length = 749

 Score =  659 bits (341), Expect = 0.0
 Identities = 347/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcttttctacaggtagaaaatgttattatagcttttaaattttctcaatcaaaactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgcttttctacaggtagaaaatgttattatagcttttaaattttctcaatcaaaactga 682

                                                                       
Query: 61  tggacagagtaggattgatttctttttcctccacttattccagagaattatcttacgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggacagagtaggattgatttctttttcctccacttattccagagaattatcttacgtga 622

                                                                       
Query: 121 aatggtttttaaacaattactaacttgtgtctttcggggcttttattaataaaatatttt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatggtctttaaacaattactaacttgtgtctttcggggcttttattaataaaatatttt 562

                                                                       
Query: 181 gttttataatatctatttgaaattgtgccattttcctggctttactccatctcaaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttataatatctatttgaaattgtgccattttcctggctttactccatctcaaatttt 502

                                                                       
Query: 241 gcctccttctgttcttcacaggctggtgacggggaaccagcacctgaactacatgaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gcctccttctgttcttcacaggctggtgacggggaaccagcacctgaaccacatgaagca 442

                                                            
Query: 301 atttggaggggtgcgtgcttctctggacagtatagaaaagtgtgggatt 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttggaggggtgcgtgcttctctggacagtatagaaaagtgtgggatt 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no234_n21.g1 MSMg01no234_n21.g1 CHROMAT_FILE:
MSMg01no234_n21.g1 PHD_FILE: MSMg01no234_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:59 2005
         (348 letters)



>mm_chr1_50645028_50645775
          Length = 748

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagcatttcatgctattcatatcatatgtaagtttgatattaagttaaaaatattatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagcatttcatgctattcatatcatatgtaagtttgatattaagttaaaaatattatag 260

                                                                       
Query: 61  aggctcctattcctgaaaaattgtaagaagtgggactggtttcaggatgaacagtgagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctcctattcctgaaaaattgtaagaagtgggactggtttcaggatgaacagtgagtg 320

                                                                       
Query: 121 acaagcacatttttataagaactgtgaataaaagataagatgatgaaggaaaaaatgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagcacatttttataagaactgtgaataaaagataagatgatgaaggaaaaaatgtta 380

                                                                       
Query: 181 cctaatttaaaatatagtgccaaaatatttgccaaaataatcttgctgcaatttaacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaatttaaaatatagtgccaaaatatttgccaaaataatcttgctgcaatttaacaaa 440

                                                                       
Query: 241 tttaaaagtttgaatttataaatttggccataatcctttatgatccaaatatttaaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaaagtttgaatttataaatttggccataatcctttatgatccaaatatttaaaatg 500

                                                           
Query: 301 tgctaacttacttttggtatgctaatactctattatcaaagtatagag 348
           ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tgctaacttacttttagtatgctaatactctattatcaaagtatagag 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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