BAC Information

Click to search

BAC

Clone NameMSMg01-234O21
Chromosome1 (Build37)
Map Location 101,979,604 - 101,979,772
singlet/doubletsinglet
Overlap geneC230078M14Rik
Upstream geneLOC633295
Downstream geneEG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234O21.T7 (MSMg01no234_o21.b1)MSMg01-234O21.TJ (MSMg01no234_o21.g1)
ACCAG400665AG400666
length754808
length of high quality
(start - end)
518 (69 - 586)179 (76 - 254)
definitionCHROMAT_FILE: MSMg01no234_o21.b1 PHD_FILE: MSMg01no234_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:04 2005CHROMAT_FILE: MSMg01no234_o21.g1 PHD_FILE: MSMg01no234_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAATCTGACAAACAACCTCAGTGAAGTAGCTGGATTTAAAAATA
ACTCAAAGAAATCAGTGGCCTCCCTCTACAGGAAGATAAATAGGCTGAGA
AAGAAATTAGGAAAACAACACCCTTCACAATAGTCACAAATAATATAAAA
TACCTTGGTATGACCCTAACCAAGCAAGTGACAGATATTTATGACAAGAA
CTTCAAGTCTCTGAAGAAAGAAATCAAAGATCTCAGAAGATGGAAAGATC
TTCCACGCTCATGGATTGTCAGGTTTAATGTGGTAAAAATGGTCACCTTG
CTGAAAGAAATCTACAGATTCAATGCAATCCCCTTCATAATTCCACCTCA
ATTCATCATGGAGTTAGAAAGAACAATTTGCAAATCAATATGTATTAACA
AAAAAACCTAGGATATTGAGAACTATTCTAAACAGTAAAAGAACTACTGG
TAGACTCACTATTCCTGACTTTTAGCTATACTACAGAGCAATTGTGGAAA
AAAAAAAAAACCAAAAACCCTACAGGTATTGATACCGTTACAGGCAAGTA
GATCAATGGAATACCATTGATGACTCAGATATGAACCCACACACCTATGG
TCCCTTGATCTTTGACAAAGGAGCTAATATCATCCAGTGGTAAAAAGGAC
AGCATTTTCCACAAATGGGACTGGTTCAACTGGTTGTTAGCATGTACACT
ATGC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGATGGAAATTTTTTTAATAGCCCA
AAAGGGTTGGTAATTTAATATTCCGATTAGCCCCACAGTAGAGTAGCTTG
CCAGAGTGTCACAAAGACTTTGCATGTGTCCACACAGACAAATGCTCATA
CTAGGGTAGGATGTTCTTGGGTCATCTGATATATATATATATATATATGT
ATATGCATATACACCATTTCCCTTTTTTCCTCCCTTTCTTTTTCCCCCCC
CTTTTTTTTTTCCCCTTTTTTTCTCTTTCCCCTTCCTTCTCCCCCCAACC
CTCATTCTTTTTTTTTTTCCCCCCCCCCCCCCCCCCTTTTTCCCTTTTCC
CCCTATTTTTTTTTTTCCCCCCCTAAAAAAAATTATCTCCCTTTTCTTTC
CCCTTTCCCCTTCCCTTTTCCCCCTTTTTCCCCCCCCCCTCCATCTTTTT
TCTTTTTTTTTCCCCCTCCCCCCCCTTTTTTTTCCCCCTTTTTACACTTT
TTCCCCTCTTCCCCCCCTTCCCTCCTTTTATCTTTTCCCCCCCTTCCCTC
CCCCTTTTTTTTTTTTTTTTTTTTCCCCTTTTTCCCTTTTTCCCCTCCCT
TTCCCTTCTTTTTCCCCCCTTTCCCCTTCTCTTCTTTTTCTTCCCTTCGT
TTTTCTTTTTCCCCTCTCCCATTCTCTTTTTCCCCCCCCCCCCCTCCTTT
TTTCTTTCCTTTTCTTTTACTTCTCCTTTCCCCTCCCCTTCCCCTTTATT
ATTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_o21.g1 MSMg01no234_o21.g1 CHROMAT_FILE:
MSMg01no234_o21.g1 PHD_FILE: MSMg01no234_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:04 2005
         (179 letters)



>mm_chr1_101979404_101979982
          Length = 579

 Score =  290 bits (150), Expect = 3e-83
 Identities = 165/170 (97%), Gaps = 2/170 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatggaaatttttttaatagcccaaaagggttggtaatttaatattccgattagcccca 60
           ||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||
Sbjct: 201 tgatggaaatttttttaatagcccaaaagggttggtaatttaaaattatgattagcccca 260

                                                                       
Query: 61  cagtagagtagcttgccagagtgtcacaaagactttgcatgtgtccacacagacaaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtagagtagcttgccagagtgtcacaaagactttgcatgtgtccacacagacaaatgc 320

                                                             
Query: 121 tcatactagggtagga-tgttcttgggtcatctgatatatatatatatat 169
           |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tcatactagggt-ggaatgttcttgggtcatctgatatatatatatatat 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)