BAC Information

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BAC

Clone NameMSMg01-236P17
Chromosome1 (Build37)
Map Location 190,560,192 - 190,700,306
singlet/doubletdoublet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236P17.T7 (MSMg01no236_p17.b1)MSMg01-236P17.TJ (MSMg01no236_p17.g1)
ACCAG402075AG402076
length721726
length of high quality
(start - end)
615 (73 - 687)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no236_p17.b1 PHD_FILE: MSMg01no236_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:41 2005CHROMAT_FILE: MSMg01no236_p17.g1 PHD_FILE: MSMg01no236_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,699,692 - 190,700,306)(190,560,192 - 190,560,474)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTAGATCTCGGGAGAAATATGACTAGCGGGTGTACTTGTGGAAG
CCATATGCTGAAAGATCAAACGCTTGGTCATTGTTACTGGTGCCTTTGAT
GAAAATATATTTATGACAGTGTTTCAGTATTTTAACCAAAATTACTTTGC
AGGTAAAAGATTAGAGTACACGTTCTAAGAATACAGATTGTAAAAACATT
TTCTTGCAGATCAAATGATCCGCTGAAATGATGGCTTCTACATGAGACAG
CGGCTACTAATATTTATAAATAAGGCCCTGGAAATGAAATGGGGAAATGC
TGATAGAAACAGGATGTCAAAAGGGAGAACAAAATATCCATTGTGAAATA
AGATGAGGGCATCTGTGTTGATATCTTCTCTCTCGTGCTGCTTATTGTCG
GGTCGTACGAGAAAAAGTCAGGTGGCGGTAAATGTGATACTTGACCGTCC
ACTCACAAAGGTTCTCTTGGAATTACATCACAGCGCACTAACCTGGTGCT
CTTTCTCCATCCTGACAAACATGAACTCCTTAACTTTCATATAAATTGGG
CTTCCATAGGCTTAAAGCACAAGGCAAATGGCTTTAATTTTAAAAACTAT
TATCCAATGCAACCTAGACGTCTCCTTATTTGCAAGGGTTGGTCAGTGAT
GTCTCAGAACACTTTGGAAAC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACCTCTCTGATCTCATTCCTCA
CCAGGTCCCTTCCCATCATCACACCCAACCACACTCTGGCTTAGCTAGGA
AGTTCTTCAGGAAGCTGCCTGTCTACTCTCTTGCTGGCCTGAATCTGAGT
TGAAATAAGCATACTCGTGGCAGCTACTTCTAGGTCTGTGCAGATAAAAA
AACTTGAGTTGGGGCAATCTGAGTAGAATTCTGAGACTAAACGTCAAGGA
CACCTTTTTTCTACACTGGAACTTGAAACAGTGGCCACTAATTTTATTCA
AGTAATGGATGTTATTGTTATAGCACCCCCCCCTCGATAGTGCTTGCCTG
ACATGCAGGAATCCCTGGCTTTAATCCAAGAAGGAAGAATAAATGGGGGT
GTCCAAGGCAGGTAGAGACAAGAGGGTCAGAAGTTCAAGGCCGCCTTTAA
TTATCTAGTAAGTAATTGCCTAAGCCTCATCAACAGCTTGGCGTTAAAGG
CAGGATGTGTTTCTTTTTCTTAACATTCAAAATATGTGGCACAAGTCTTT
GTAGTGTGAGACCATTTGTTTTCATCAGTCCCTATTTGTAAGTCCAAAAA
CGTTCAGCCTACTTTTCCCCTAAAGTGTGGCATCTCATCAGTCTGGGAGG
GAACTGTAAATTAGCCCTCAGAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_p17.b1 MSMg01no236_p17.b1 CHROMAT_FILE:
MSMg01no236_p17.b1 PHD_FILE: MSMg01no236_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:41 2005
         (615 letters)



>mm_chr1_190699492_190700506
          Length = 1015

 Score = 1050 bits (543), Expect = 0.0
 Identities = 597/615 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgactagcgggtgtacttgtggaagccatatgctgaaagatcaaacgcttggtcatt 60
           ||||||||||||||||||||  |||||| |||||||||||||| |||| |||||||||||
Sbjct: 815 atatgactagcgggtgtactcatggaagtcatatgctgaaagaacaaaggcttggtcatt 756

                                                                       
Query: 61  gttactggtgcctttgatgaaaatatatttatgacagtgtttcagtattttaaccaaaat 120
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 755 gttactggtgcctttgatgaaaatatatttatgacagtatttaagtattttaaccaaaat 696

                                                                       
Query: 121 tactttgcaggtaaaagattagagtacacgttctaagaatacagattgtaaaaacatttt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 695 tactttgcaggtaaaagattagagtacaagttctaagaatacagattgtaaaaacatttt 636

                                                                       
Query: 181 cttgcagatcaaatgatccgctgaaatgatggcttctacatgagacagcggctactaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cttgcagatcaaatgatccgctgaaatgatggcttctacatgagacagcggctactaata 576

                                                                       
Query: 241 tttataaataaggccctggaaatgaaatggggaaatgctgatagaaacaggatgtcaaaa 300
           |||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 575 tttataaagaaggacctggaaatgaaatggggaaatgctgatagaaacagcatgtcaaaa 516

                                                                       
Query: 301 gggagaacaaaatatccattgtgaaataagatgagggcatctgtgttgatatcttctctc 360
            ||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||
Sbjct: 515 aggagaacaaaatatccattgtgaaataagatgaggacatctgccttgatgtcttctctc 456

                                                                       
Query: 361 tcgtgctgcttattgtcgggtcgtacgagaaaaagtcaggtggcggtaaatgtgatactt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 455 tcgtgctgcttattgtcgggtcgtacgagaaaaagtcagatggcggtaaatgtgatactt 396

                                                                       
Query: 421 gaccgtccactcacaaaggttctcttggaattacatcacagcgcactaacctggtgctct 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taccgtccactcacaaaggttctcttggaattacatcacagcgcactaacctggtgctct 336

                                                                       
Query: 481 ttctccatcctgacaaacatgaactccttaactttcatataaattgggcttccataggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttctccatcctgacaaacatgaactccttaactttcatataaattgggcttccataggct 276

                                                                       
Query: 541 taaagcacaaggcaaatggctttaattttaaaaactattatccaatgcaacctagacgtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 taaagcacaaggcaaatggctttaattttaaaaactattatccaatgcaacctagacgtc 216

                          
Query: 601 tccttatttgcaagg 615
           |||||||||||||||
Sbjct: 215 tccttatttgcaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no236_p17.g1 MSMg01no236_p17.g1 CHROMAT_FILE:
MSMg01no236_p17.g1 PHD_FILE: MSMg01no236_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:41 2005
         (285 letters)



>mm_chr1_190559992_190560676
          Length = 685

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacctctctgatctcattcctcaccaggtcccttcccatcatcacacccaaccacactc 60
           ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 201 ccacctctctgatctcattcctcaccaggtcccttcccatcatcagaacgaaccacactc 260

                                                                       
Query: 61  tggcttagctaggaagttcttcaggaagctgcctgtctactctcttgctggcctgaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcttagctaggaagttcttcaggaagctgcctgtctactctcttgctggcctgaatct 320

                                                                       
Query: 121 gagttgaaataagcatactcgtggcagctacttctaggtctgtgcagataaaaaaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttgaaataagcatactcgtggcagctacttctaggtctgtgcagataaaaaaacttg 380

                                                                       
Query: 181 agttggggcaatctgagtagaattctgagactaaacgtcaaggacaccttttttctacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttggggcaatctgagtagaattctgagactaaacgtcaaggacaccttttttctacac 440

                                                      
Query: 241 tggaacttgaaacagtggccactaattttattcaagtaatgga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaacttgaaacagtggccactaattttattcaagtaatgga 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)