BAC Information

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BAC

Clone NameMSMg01-237B17
Chromosome1 (Build37)
Map Location 37,531,454 - 37,531,953
singlet/doubletsinglet
Overlap geneMgat4a
Upstream geneCnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50
Downstream gene2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237B17.T7 (MSMg01no237_b17.b1)MSMg01-237B17.TJ (MSMg01no237_b17.g1)
ACCAG402157AG402158
length745701
length of high quality
(start - end)
---505 (107 - 611)
definitionCHROMAT_FILE: MSMg01no237_b17.b1 PHD_FILE: MSMg01no237_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:50 2005CHROMAT_FILE: MSMg01no237_b17.g1 PHD_FILE: MSMg01no237_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTTTGCCACATCTGCATTTTTATTTTTTTTGAGTTTATATATTCTTC
TTTTCCCCCTCTNCTNNNCCCCTCTATAATGCGGCCGCTAATAGATACTA
TTTCGAGAGAGCGCGGAATCCCTTATTTACTGAAAATGTGCTGGCTAAGA
GGCATTTTCTCAGGTGACCCTGGCTTGTGTTACGCCGAAAAAATAAATAA
GTAAATCTAAGCGGGACACTATTGAAACTTTATGGATTTTCACCCATCCA
GCCTGGAAATTTCTGTTGGAAAAAAGGTTCGCTGGTAAAAAAGCCAAAAA
TGTAAAAAGGGGGTCAAAATGGGGTTGGAAAAAAAGGTTGGGGAACTCTA
AAAGGTTTTGGGGAAAGGGGGTCCCTTAAAAGGGGGTTTTTAAAAAAAAG
GGGGGGCCCCCCAAAAAAATACTTTTTGGGGGGATATTTTTTTTTATTAA
AAAATTTCCCCCCCCCAAAAGGGGGGGGGGGCGACAAAAAAAAAATTTTT
TTGTCCCCCCACCTTTAAAAAATAAAAAAAAAAATATATGTAGGAGACAA
AAAAAATAAATTTTTTTTTTCCGCCTAAAAAAAATATTTTTTTTTTTTGT
TTTCTTAGGGGATATTAAGACGATTTTTGTTATATTGCTTTTTTTTAATG
TTATTCTCTTATATTATAATATATAACCACAATATAATTTTTATTATTTC
TCGAGACGATTTTAATTCTTAATATATACCCGTTCTAATTTATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCCCC
AAAATTCCAGGAAGGTAATTTGTACCTGACAATCAGCAGGACCAAGAGTA
CACACAGCATGTTCAAAAATGGGGTTGAAAGCTTATGAAAACAAAACAAA
AAAAAAACAAAAACAAAAAACAAAACAAAACAAAACAAAAAACCTTGTTT
CCTGGTCTGAGACAAAGAGTACTACTGCCCACATAAATACTTCACTTTTT
AAACTTCAAGCAAAGGCAAAAACATACCACAGTATTTCTGTGAGCTTTAC
TAGTTTCTAAAATGGTCGTGTGCTGTAATATAGTGAGTCAGAAAGAGGAA
GTTAAAAGGCTAAAAAAATTTAAAAAAAGAAAAAGGTGACTATTTCTTCT
TCATTTGAATGATCTGTCCTAGCTTTTCTGTCTCCTCTCATCTGCAGATG
ACAGCAGACATTCCCACACAGGCCCTAGCACTCTTTCAGTTCAAATCACT
TCATAAACTCACCTCTTCTGAAACCTAGTGGGATAGCCTAGTCCAGAACT
TGCCTGGATCATGACAACAGTCCCTATCCTTAATAAAGCCGCCAGTGGGT
GCCTTTCAAATGGCAGGCCTTGACACCTCAGCAAGGTCTGAAACTACGGT
GCAATTGTGAGACACTCAAGCGGAGATGCTATCGCACAGGTGTCCAAGTA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_b17.g1 MSMg01no237_b17.g1 CHROMAT_FILE:
MSMg01no237_b17.g1 PHD_FILE: MSMg01no237_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:50 2005
         (505 letters)



>mm_chr1_37531247_37532153
          Length = 907

 Score =  849 bits (439), Expect = 0.0
 Identities = 487/507 (96%), Gaps = 9/507 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatgttcaaaaatggggttgaaagcttatgaaaacaaaacaaaaaaaaaacaaaaacaa 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 208 gcatgttcaaaaatggggttgaaagcttatgaaaacaaaac--aaaaaaaacaaaaacaa 265

                                                                       
Query: 61  aaaacaaaacaaaacaaaacaaaaaaccttgtttcctggtctgagacaaagagtactact 120
                ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 266 -----aaaacaaaacaaaacaaaaaaccttgttttctgctctgagacaaagagtactact 320

                                                                       
Query: 121 gcccacataaatacttcactttttaaacttcaagcaaaggcaaaaacataccacagtatt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gcccacataaatacttcactttttaaacttcaagcaaaggcaaacacataccacagtatt 380

                                                                       
Query: 181 tctgtgagctttactagtttctaaaatggtcgtgtgctgtaatatagtgagtcagaaaga 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtgagctttactagtttctaaaacggtcgtgtgctgtaatatagtgagtcagaaaga 440

                                                                       
Query: 241 ggaagttaaaaggctaaaaaaatt--taaaaaaagaaaaaggtgactatttcttcttcat 298
           ||||||||||||||||||||||||   ||||||| ||||||| ||||| |||||||||||
Sbjct: 441 ggaagttaaaaggctaaaaaaattaaaaaaaaaaaaaaaaggcgactacttcttcttcat 500

                                                                       
Query: 299 ttgaatgatctgtcctagcttttctgtctcctctcatctgcagatgacagcagacattcc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaatgatctgtcctagcttttctgtctcctctcatctgcagatgacagcagacattcc 560

                                                                       
Query: 359 cacacaggccctagcactctttcagttcaaatcacttcataaactcacctcttctgaaac 418
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 561 cacacaggccccagcactctttcagttcaaatcacttcataaactcacctcttcaggaac 620

                                                                       
Query: 419 ctagtgggatagcctagtccagaacttgcctggatcatgacaacagtccctatccttaat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagtgggatagcctagtccagaacttgcctggatcatgacaacagtccctatccttaat 680

                                      
Query: 479 aaagccgccagtgggtgcctttcaaat 505
           |||||||||||||||||||||||||||
Sbjct: 681 aaagccgccagtgggtgcctttcaaat 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 907
Length adjustment: 10
Effective length of query: 495
Effective length of database: 897
Effective search space:   444015
Effective search space used:   444015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)