BAC Information

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BAC

Clone NameMSMg01-237C11
Chromosome1 (Build37)
Map Location 27,892,409 - 27,892,775
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952
Downstream geneEG433281, EG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237C11.T7 (MSMg01no237_c11.b1)MSMg01-237C11.TJ (MSMg01no237_c11.g1)
ACCAG402188AG402189
length744751
length of high quality
(start - end)
669 (71 - 739)367 (385 - 751)
definitionCHROMAT_FILE: MSMg01no237_c11.b1 PHD_FILE: MSMg01no237_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:54 2005CHROMAT_FILE: MSMg01no237_c11.g1 PHD_FILE: MSMg01no237_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCTCCACTTAACAATCAGTTCCTGGGCTACTTTTAGTTGGTACATTTT
CCATGACTGATTCTATTTCCTCATGGGTTATGAGACTGCCTAGATTCTTT
ACTTGATCTTGATTTAACTTTGGTCCATGGTATCTGCCTACAAAACCATC
CATTTTGTTTAGATTTTCTAGTTTTGTAAAGTATAGGTTTTTGAAGTAAG
ACAGTGATTTTTAATTTCCTCAGATCTGTTTTATATCTTCCTTTTCCTTT
CATTTCTAATTTTGTAAATGATAATACTGTCTCTTGCCTTTTAGTTAGTT
TGGCTAAGTGTTTGTCTATGTTGCTGATTTTCTCAAAGACAAAGCTCTTG
GTTTTGTTGATTCTTTGTATTGTTCTCTTTGTTTCTAATTGCCTGGTTTC
ATCCCTGAATTTTACTGTTTCCTGAAGTCTTATCTACTTTTGTGTGTTTG
CTTCCTTTTCTTCTAAAACTTTCAGGTGTGCTTTTAAGTTGCTAGTATGG
GACCCCCCCCCCCAATTGCTTTATGAAGGTGCTTAGTTCTATGAATTTTT
CTTTTAACACTGCTTTCATTGTGTTCCAAAAAATTGGGTATATTTTATCT
CACTTTTCATTTCATTCTAGAATGGGTTTAATATCTTTTCCTCTTTTTAT
AACCTTGACCAAGTTATTATTGAATAGAACATTGTTCAGTACCN
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTACTTTGCAAGGGCAAGAAGA
ATGAAGTGAGTTCAAGTCCAGTTCCCTCTATCTATCTAATTCCAGGCCAA
CTATGGCTACACAGCAAAACCTTGTATCAAAAAAAGAAAATAAAACAATA
GCAACAAAGGAAAACAGCAGATTTTTGTCATCATAAAGTTATTCTAAGTT
GCCTTGTATAATCGTGAATTTTGTAGATCTAATATATTCATTTCCACAAA
GCAATGTAAGTTTTCTTTGACAAGTGAGAAACCACTTCATAAATTTTAAG
TACATATTCAATCCAACGTCTTACATCGCCTGACAAAATTGTCAAACACT
TTCAACCATTCCATGTGAATGATAATTATAAGTTTGTGTGTTTTAAATTA
TTGCACATAATCAACAAGCAAAACTATACATAAACTAAATCAGCCTTTCC
ATCATTTTTAAATTGATATAGTTTAGAAAATATAAGCATTAGCATAATCT
TTATAGATAGAAGTTATATATATATTTCTTTGTTTTCAAAAATTATATTT
ATTCTCAATATGTCCAATAAACACTGTCATATTTTTGTATGTTTATGGTA
TTTGTTGTTGTTTTATGACATGAGCTCCAGAATTCTTCAAAATTTTAGAC
TACTAAATATTATAAAAGAAAGTAATTACTACTAGATGTTGAAGAAACAG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_c11.g1 MSMg01no237_c11.g1 CHROMAT_FILE:
MSMg01no237_c11.g1 PHD_FILE: MSMg01no237_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:54 2005
         (367 letters)



>mm_chr1_27892209_27892975
          Length = 767

 Score =  648 bits (335), Expect = 0.0
 Identities = 359/367 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattgtcaaacactttcaaccattccatgtgaatgataattataagtttgtgtgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaattgtcaaacactttcaaccattccatgtgaatgataattataagtttgtgtgtttt 260

                                                                       
Query: 61  aaattattgcacataatcaacaagcaaaactatacataaactaaatcagcctttccatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aaattattgcacataatcaacaagcaaaactatacataaactaaatcagcctttctatca 320

                                                                       
Query: 121 tttttaaattgatatagtttagaaaatataagcattagcataatctttatagatagaagt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tttttaaattgatatagtttagaaaatataagcgttagcataatctttatagatagaagt 380

                                                                       
Query: 181 tatatatatatttctttgttttcaaaaattatatttattctcaatatgtccaataaacac 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatatatatttctttgttttcaataattatatttattctcaatatgtccaataaacac 440

                                                                       
Query: 241 tgtcatatttttgtatgtttatggtatttgttgttgttttatgacatgagctccagaatt 300
            |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 cgtcagatttttgtatgtttatggtatttgttgttgttttatgacataagctccagaatt 500

                                                                       
Query: 301 cttcaaaattttagactactaaatattataaaagaaagtaattactactagatgttgaag 360
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 cttcaaaattttagactacaaaatattataaaagcaagtaattactactagatgttgaag 560

                  
Query: 361 aaacagg 367
           |||||||
Sbjct: 561 aaacagg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)