BAC Information

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BAC

Clone NameMSMg01-237N05
Chromosome1 (Build37)
Map Location 112,044,151 - 112,044,336
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N05.T7 (MSMg01no237_n05.b1)MSMg01-237N05.TJ (MSMg01no237_n05.g1)
ACCAG402662AG402663
length712743
length of high quality
(start - end)
182 (117 - 298)551 (77 - 627)
definitionCHROMAT_FILE: MSMg01no237_n05.b1 PHD_FILE: MSMg01no237_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:44 2005CHROMAT_FILE: MSMg01no237_n05.g1 PHD_FILE: MSMg01no237_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAATTTGGGCGCTATACGACTCACTATTTCGAAGTGGGCGGAATCTAG
ATATTTTCGNTACAATGATNATGTTTGCTTGGATCTTTTTCGGTAATTTA
ACATATTACCTCCAAATGTTTTTTGGGCACCTTTTTCCTGATTGTCCAAT
GACTCCATGTGTTCTCCATTTTCATAATTAAAACTACATCTAAATTGTTG
AACTAAAAGACACTATCAATGTGGTCTCTGAATATGTTCATTGATGATAT
TTCCTTTGCAGAGTGATAATGAGATGAAATTGGACAAGAGAGGACTTTCA
TGATTTANACAGTGATCATTCTTGAAAGAATAAGCTGTGTGATTTCACTT
TGAATTACCAACAAATTAACTGATAATTGATTTACTCAANTGATACTCAA
TTTGACTGATTTTAAGATAAAACATGTACTTGTCTACTTAAGATCATTAC
TCCAATTAGAGAGGAAAGGGAGAAAAGAGAAGAGGGGGAGGGGCCTTGCA
TTAAATTTTTCATACTACTATTTTTCAAACCAATAACTTATTTTAAATTT
CCCCTTAGCTGGTAAGCCTATGGACCTAAGAGATATTTGAGGCTGACTCC
AGCAATGTAAAAAGCAACTTTTTAGATATTTAAATAGTTTCTACACCACC
TGAAGGCCTTCACAAAAGGCTTCTCACAATGCTGTCGAGCTCCTGAATGG
CAAAGGGAACCN
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCAGAGACTTTTATCA
GGAATGGGGGCTGAATTTTGTCAAATGATTTCTTAGCATCTAATGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACTTTGAT
GGATTTCCGTATATCAAATCATCCTTGCATTCCTGGAATGAAGCCTACTT
GATCATGATGGATGACAATTTTGATGTGTTCTTGGATTCAGTTAGTGAGA
GTTTTATTGAGTATTTTTGAATCGATGTTCATAAGGGAAATTGGTTTCAA
GTACTCTTTCTTTGTTGGGTCTTTATATGGTTTAGGTATCAGAGTAATTC
AGGCTTCATAGAATGAATTGGCTAGAGTACCTTATATTTCTATTTTTTCA
AATAGTTTGAGTAGAATTGGAATTAGGTCTTCTTTGAAGGTCTGACGGAA
CTTTGCACTAAGTCCATCTGGTCCTGAGCTATTTTTTTTTTTCTTGGTTG
GTAGACTATTAATGACTACTTCTATTTCCTTAGGGGATATGGGACACTTT
AGATCGTTAATCTGATCCTGATTTAACTTTAGTACCTGGTATCTGTCTAG
AAAATTGAACATTTTATCCAAGTTTTCCAGTTTTGTGAGCATAGCTTTTT
TTTATTAAGGATTTGACGATATATTGGATTTCTTCTGGTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n05.b1 MSMg01no237_n05.b1 CHROMAT_FILE:
MSMg01no237_n05.b1 PHD_FILE: MSMg01no237_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:44 2005
         (182 letters)



>mm_chr1_112043951_112044537
          Length = 587

 Score =  298 bits (154), Expect = 1e-85
 Identities = 178/186 (95%), Gaps = 5/186 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttttgggcacctttttcctga-ttgtccaatgactccatgtgttctccattttcat 59
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttttgggcacctttttcctgagttgtccaatgactccatgtgttctccattttcat 260

                                                                       
Query: 60  aattaa-aactacatctaaattgttgaactaaaagacactatcaatgtggtctctgaata 118
           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaacaactacatctaaatttttgaactaaaagacactatcaatgtggtctctgaata 320

                                                                       
Query: 119 tgttcattgatgatatttcctttgcagagtgataatgagatga-aa-ttgga-caagaga 175
           ||  ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct: 321 tgggcattgatgatatttcctttgcagagtgataatgagatgagaagttggagcaagaga 380

                 
Query: 176 ggactt 181
           ||||||
Sbjct: 381 ggactt 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 587
Length adjustment: 8
Effective length of query: 174
Effective length of database: 579
Effective search space:   100746
Effective search space used:   100746
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)