Query= MSMg01no260_a23.b1 MSMg01no260_a23.b1 CHROMAT_FILE:
MSMg01no260_a23.b1 PHD_FILE: MSMg01no260_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:02 2005
(163 letters)
>mm_chr1_33908131_33908692
Length = 562
Score = 257 bits (133), Expect = 2e-73
Identities = 151/157 (96%), Gaps = 3/157 (1%)
Strand = Plus / Minus
Query: 8 ttctgagtgtatacccagtgtgtgaactcctgagtgtgtaaggagtgggtgaatgctgag 67
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttctgagtgtataagcagtgtgtgaactcctgagtgtgtaaggagtgggtgaatgctgag 303
Query: 68 tttgtgaactcctgagtgtataaagagtgtgag-tcttgagtgtgtatgcaatgtgtgaa 126
||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct: 302 tttgtgaactcctgagtgtataaggagtgtgagttc-tgagtgtgtatgcaatgtgtgaa 244
Query: 127 ctcctgagtatgtaggagtgggtgagtcctgagtatg 163
|||||||||||||| ||||||||||||||||||||||
Sbjct: 243 ctcctgagtatgta-gagtgggtgagtcctgagtatg 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 562
Length adjustment: 8
Effective length of query: 155
Effective length of database: 554
Effective search space: 85870
Effective search space used: 85870
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no260_a23.g1 MSMg01no260_a23.g1 CHROMAT_FILE:
MSMg01no260_a23.g1 PHD_FILE: MSMg01no260_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:02 2005
(639 letters)
>mm_chr1_33767977_33769015
Length = 1039
Score = 1042 bits (539), Expect = 0.0
Identities = 599/637 (94%), Gaps = 29/637 (4%)
Strand = Plus / Plus
Query: 1 ccagagctactccccacccccaaagtttcactatgtggatgatgtaataacttctgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagagctactccccacccccaaagtttcactatgtggatgatgtaataacttctgagtg 260
Query: 61 gcccgtgtggctcagcaaggcatctggaagaactataaaaacatcagataaagagttaaa 120
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcatgtggctcagcaaggcatctggaagaactataaaaacatcagataaagagttaaa 320
Query: 121 acataaaaggcagcctgagtgggtgggaaagggcattcagaaaccacacgactatctaat 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacaaaaggcagcctgagtgggtgggaaagggcattcagaaaccacacgactatctaat 380
Query: 181 gaaactccagtaccaaggataggtacctcccatgaatcctgcgcctggagaagcctccaa 240
|||||||||||||||||||||||||||||| ||
Sbjct: 381 gaaactccagtaccaaggataggtacctcc----------------------------aa 412
Query: 241 ggccccacaaataatacagacattgctaatgctgttggcttcccaacagaactagatagc 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 413 ggccccacaaataatacagacattgctaatgctgttggctttccaacagaactagatagc 472
Query: 301 aaggctctattattgaagacactgcatggtttcctatagaagacattttgctatgtttgg 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 473 aaggctctattattgaagacactgcatggtttcctgtagaagacattttgctatgtttgg 532
Query: 361 gcattggcttagtttcctcggttggtcagtcctgccctcaacatttattgaagctttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gcattggcttagtttcctcggttggtcagtcctgccctcaacatttattgaagctttttt 592
Query: 421 ttttcttcataaaatatattttgttcatgctttcccctctccgacagtttctcccagacc 480
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 593 ttt-cttcataaaatatattttgttcatgctttcccctctcccacagtttctcccagacc 651
Query: 481 ctccctacctcactatccttgtgaatttatgttctgtctccctctctctttaaagcaaaa 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctccctacctcactacccttgtgaatttatgttctgtctccctctctctttaaagcaaaa 711
Query: 541 ctaataaacacacacatacacacctcacaaaactatccaaaaaaagaatatcaaaataca 600
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 712 ccaataaacacacacatacacaccccacaaaactatccaaaaaaagaatatcaaaataca 771
Query: 601 cacgcaaaagaccaagaaatgcccaaacaaaacaaaa 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 772 cacgcaaaagaccaagaaatgcccaaacaaaacaaaa 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
