BAC Information

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BAC

Clone NameMSMg01-260E12
Chromosome1 (Build37)
Map Location 29,990,503 - 29,990,842
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623924, EG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E12.T7 (MSMg01no260_e12.b1)MSMg01-260E12.TJ (MSMg01no260_e12.g1)
ACCAG402989AG402990
length739736
length of high quality
(start - end)
477 (56 - 532)476 (82 - 557)
definitionCHROMAT_FILE: MSMg01no260_e12.b1 PHD_FILE: MSMg01no260_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:20 2005CHROMAT_FILE: MSMg01no260_e12.g1 PHD_FILE: MSMg01no260_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGACGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTATTTTACTCAGTTGTCCATAGATATATGGACA
TATGTCTATAAGTATATGGGTTTAAGACTGAGATTTTGATTTGCTTTCAT
TGATTAGCCTGTCTGTTTTCAAAAAAATACCATTTGTTTTTTATTACTAG
AGCTCTGTAGCACATCTTGAAATCATGAATAGGGATATGTCCAGCAGTCC
CTTTATTGAGAATGGATAAATTGTGGTATACATTATATGATAGATTATTA
TTCAGCAGTTAAAAATTAATATCATGATATTTGCAGGCAAATAGATGGAC
CAACAAAAATATCATCTTGAGTGAGGTAACCCAGACCTAGAAAGACAAAC
ACGGTATGTACTCACTTATATGTCCACATTAGCTATTAAGTAAAGGACAA
TCATACTACAATTTACAAAAGCAGAGATACTAAGCAACAAAGAGGCCTCC
TTGAGGAGTAGATTTTGTAATGTGAACAGGAGGTATCAGGTGGTTATATC
TGGTAGAGATAACTAGAATTTTGTCACTTTTGCCAGTTGATGTAAAAACC
TGCCCTGCTTGAGTTCCTATCCTGACTCTCTTTGATGACTATCTGCAGAA
ACTAAGCTAAATAAACCTTCCCCCCCCTCAAAATAAAATAATTAGCATAG
TGTCAATCCCCTGTCATCCTTATCATTGTCCCATATGAA
NCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTTTCTTTTCCCTTC
GAGCAGCCCTTGAGTCATTTATGGTTTAATGTGTCATTAATTCCATTAAT
AGGAATCACAGTTCAAGAATGCTTCACACTTCTAAACTCTTTGATTACAG
TTTCTTAAATCTGGTTTCAAAATCTTTGTCACTTGATGAAACTATGGCAA
AGCAGTATTCATGCTTGCAATCTGGCCTCTCGAATTCTCTCTAACATAGA
GAAGACTCGTTGGGAATCTCCATATGATCCTATTCACTATCACTTCCTTC
CATTGACTCTCACCTCATGTCAACCACACTGATTAAAACTCTGTGACTTT
AATCTCTGAGCATTAAAAACACACACACACAGACACACACATATATATAT
GTATATGTTTTTATGCATACATATATTATATATGCATATATTTTATATAT
ACATATACATATTATATAATCTATACTATATTTTAGGTGTTAGAAATTGA
TTATAGGAAGTTGTATTATATACTATATAAATATTGTCACTGAAGTATAG
TCAGAATAAAAGTTAACGGTAAGAATTCATGCGTGCTACACACCTATGCT
TTTAACACTAGCTAGCAATTTTCTTCTGCTTTCAGCTCCACCACATAACC
TCAAATACCTTTGTCTCAATTTACGAACATGTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e12.g1 MSMg01no260_e12.g1 CHROMAT_FILE:
MSMg01no260_e12.g1 PHD_FILE: MSMg01no260_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:20 2005
         (476 letters)



>mm_chr1_29990303_29991178
          Length = 876

 Score =  590 bits (305), Expect = e-173
 Identities = 332/341 (97%), Gaps = 2/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttttcttttcccttcgagcagcccttgagtcatttatggtttaatgtgtcattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tcatttttcttttcccttcgagcagcccttgagtcatttatggtttaatgtgtcattaat 481

                                                                       
Query: 61  tccattaataggaatcacagttcaagaatgcttcacacttctaaactctttgattacagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 480 tccattaataggaatcacagttcaagaatgcttcacacttctaaactcattgattacagt 421

                                                                       
Query: 121 ttcttaaatctggtttcaaaatctttgtcacttgatgaaactatggcaaagcagtattca 180
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 420 ttcttaaatctggtttcacaatcttcgtcacttgatgaaactatggcaaagcagtattca 361

                                                                       
Query: 181 tgcttgcaatctggcctctcgaattctctctaacatagagaagactcgttgggaatctcc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgcttgcaatctggcctctagaattctctctaacatagagaagactcgttgggaatctcc 301

                                                                       
Query: 241 atatgatccta-ttcactatcacttccttccattgactctcacctcatgtcaaccacact 299
           |||||| || |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atatga-cccacatcactatcacttccttccattgactctcacctcatgtcaaccacact 242

                                                    
Query: 300 gattaaaactctgtgactttaatctctgagcattaaaaaca 340
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattaaaactctgtgactttaatctctgagcattaaaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)