BAC Information

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BAC

Clone NameMSMg01-260F16
Chromosome1 (Build37)
Map Location 120,690,209 - 120,690,467
singlet/doubletsinglet
Overlap genenone
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260F16.T7 (MSMg01no260_f16.b1)MSMg01-260F16.TJ (MSMg01no260_f16.g1)
ACCAG403043AG403044
length756765
length of high quality
(start - end)
252 (68 - 319)---
definitionCHROMAT_FILE: MSMg01no260_f16.b1 PHD_FILE: MSMg01no260_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:25 2005CHROMAT_FILE: MSMg01no260_f16.g1 PHD_FILE: MSMg01no260_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAAATCCGCGGAAT
TCTGGGAATTCCCCCCAGACTAACTTTGTCATGTATACATACAAACAAAT
ACGTTCACACATGCACACGCGCGTGCATGAACACACACATAAGGTGGAAA
ATGATATCTACACTGTATGTAGACATCTGACCATACACAAATGTATTTGC
ACATGAACACACACACACACACACACACACACACACACCTTGGAGTGATT
TTAAAATGCTTTGATTACCTCTTATGCTGGGCGCTTCTAATCCTCTGCCT
ACTACCCTGGACCCAATATTCTAATTGGCCAGTGGCCACTTACCCGAAAT
CTCACATAACTCGTCTCCTGCAGCTCCTACGTTCATCCATATCCCACTGC
TTCATGGTGATCACCTCTTCTCCTTCTCCTCCCTGTATCCTAACCCACAC
AACTCTAAGGGTCCCACCCCATGTCCCTTTGCCCAGCCATTGGCCACTGG
CACCTTTACTGATCTATCAAAAACCAACTGGGGACAAAGACCTTTAGAGT
TTGCGCACATGCATTATAACCAATCTCCAACAGAGATCTCCACTCCATAA
GTTATCCACCAGACATCACATCTGGTTGTGCGTTCACCAAGCGAAGCATT
TTTCTGAGACTTAAAGACACTTTAAAAGGTTTGAGGCACGCTCCAGCGCC
CACTTTGTCCCGTGATCTGAATATCCTAAGATAGTGCAGATCTCCCTTTC
TGGTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACACGCACACACACACATACACACACCTA
TATACCTACAAATACACATCTGCGTGTGTAGGGTACGCAGAGGTTGGGGG
GGAGAGAAATACCTTAAACCCCTTTTAACGTTTATAGCTATTATTATTCG
CCTGTATCTGTTTTTCCTGCTCTCACTCTCTCCTTGTTTCTCCCGATAGA
TTTCTTCTACACCTTTTTTCTTGTTACTTGGCCCCTCCTTCCCAGCATCT
TCCCTCGGTCATATCCTCTTTTTTTTTTGCTCGGTGCTCTCTCCCTTGGT
CTCCCCATGTTTTGCTGACCCCCCACCCCCCTTCGCTTTCGCGGTCTAAT
GAGCGTTTCTCCCCCCCCCGCAGTTCTTGTCCCTAATCGAATTTCCTCAT
ATGTATTTGACGATCTACCTTCATTTTCTCTATGCGCCTTTTTACCCTTA
CTTAGGTTCCTATGACACCCTGTCTTCCGTTTCTCCTCACACCTCCTATC
ATCCTTTCTATGCCTGTAATGCTTTTCTTCCATTTCCTCTTCTTTGCGAT
CCTGTTTGTCTCGTATTTTTCCCTCTTTCTTTCTTTCTTCTCTCTCTGTT
TATATTTTATCTCCTTCGCTTCCACTCTCTTCCTTTCTTTTTCTCTTCCC
ATTATTACATCTTTTTCTTTCTTTCCTTTATGTTTCCGCACTCCTTTCTC
TTATGTCCCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_f16.b1 MSMg01no260_f16.b1 CHROMAT_FILE:
MSMg01no260_f16.b1 PHD_FILE: MSMg01no260_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:25 2005
         (252 letters)



>mm_chr1_120690129_120690780
          Length = 652

 Score =  427 bits (221), Expect = e-124
 Identities = 246/259 (94%), Gaps = 8/259 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactaactttgtcatgtatacatacaaacaaatacgttcacacatgcacacgcgcgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 339 gactaactttgtcatgtatacatacaaacaaatacgttcacacatgcacacgcgcgtgcg 280

                                                                       
Query: 61  tgaacacacacataaggtggaaaatgatatctacactgtatgtagacatctgaccataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgaacacacacataaggtggaaaatgatatctacactgtatgtagacatctgaccataca 220

                                                                       
Query: 121 caaatgtatttgcacatga--------acacacacacacacacacacacacacacacacc 172
           |||||||||||||||||||        |||||||||||||||||||||||||||||||||
Sbjct: 219 caaatgtatttgcacatgaacacacacacacacacacacacacacacacacacacacacc 160

                                                                       
Query: 173 ttggagtgattttaaaatgctttgattacctcttatgctgggcgcttctaatcctctgcc 232
           ||||||||||||||||||||||||  ||||||||| |||||| |||||||||||||||||
Sbjct: 159 ttggagtgattttaaaatgctttggctacctcttaggctgggtgcttctaatcctctgcc 100

                              
Query: 233 tactaccctggacccaata 251
           |||||||||||||||||||
Sbjct: 99  tactaccctggacccaata 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)