BAC Information

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BAC

Clone NameMSMg01-260F23
Chromosome1 (Build37)
Map Location 149,167,504 - 149,325,529
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260F23.T7 (MSMg01no260_f23.b1)MSMg01-260F23.TJ (MSMg01no260_f23.g1)
ACCAG403055AG403056
length753742
length of high quality
(start - end)		630 (57 - 686)576 (75 - 650)
definitionCHROMAT_FILE: MSMg01no260_f23.b1 PHD_FILE: MSMg01no260_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:27 2005CHROMAT_FILE: MSMg01no260_f23.g1 PHD_FILE: MSMg01no260_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(149,167,504 - 149,168,133)(149,325,023 - 149,325,529)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTAACAAATATCCGAGGAATGATACTTAAATATGGTGAAACAGTG
TCCTCATGTGTGTAATAGGTTGCTTCCTCATGTGTGTAATTGCTTGTGTT
AAGGTCAGTAGGAGAAGAAAGATAAAAAGCATAGGGAAGAGATATGATGC
ATTTACATATCCAGTATTTTCCTTATTTTCTTTTAGAATTAGAATTTCTT
AATACTTTGTAAATTTGAGGGGGAAATTATTAACAGAAAAATAAACAAAT
AATATAGTCTGTACTAAGATAAGTTAATATTACTATAAAATGATACTTTA
GGTACATCTGTATGGACCATATATTTTGAAGATGCTAAAATATCATGGCA
CTAAGTTGCATAGATAGTTCTGTTACCCATATTCTCTCTTTTCTCAAATC
TAGAGAAAATGTTCTCCAATTTTATACTTCATTTCCTGTCAGTCAGACCT
TATTATATTGTAAATTCAGAGAAACAATCCATTTCACGTTGTTAAAATGT
TCATATTTGCTTTTGTTAACAATTTATCACTCATTTTTTTCCATGTTAGT
GGAAAACTAATGTTTTGGTTGCTTCTTTCTTTACAAAAAAATATGATATA
CATTTCTCCATGTTTTCCATGATAAAATATTCATTTTAAAAGATTGTGTT
TTAATTGGGTATAGAGATATTATGAATGGACATAGATAGTATAGAGCTCA
AGT

NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTGGATATCTTGTTTTTGCACCA
CACACATAAAAATAAACTGGTGTGATTATATGAAATGTAGATTTGTGCTC
ACCATTTATTTCCCAAGGAACCCAGCTAAACTAAAAATTTAACTTCAGGG
GATGCTTGCCTTGATTATAAATTAAGATTCATTTTCTTAAAGGGAATTGG
AATATCTTACAAAATATTGGTGGCTTTAGGCTATATTATTTCTAACCACT
TTGGTGTATGAATTAAATATAATTTAATTATATTTTAATATATCCCTAAT
TTTGGCTCAAATCTTAAAGATAATCAGAGAAAGTATAAGCTATAAGTAAT
TATTGCTCACATTAAATAATGTTTAGTTAATTCACTAAAAACTAAAATCT
GTCTATTTCTGTTTTCTTTAGTTTTGCAAGACAGGCAATAATGCATATTT
TAGTAGAGGTTGGTTGATTGCAAAATAGCTCCCATAGATCAGAATTTGAT
TTCTGGTGTGGGCAATTCAATGAATCATTTATTATATCATGCACAGGTGT
TCATTAGGNAAGTGTAATATTATAGTGGAAAGAGCAGCTATTCTCTCNAG
ATCATTCAAGTGCAAAATTGCATTAGGGACTATGATAAGGGATTAAATGA
CCATAAGTGCTATCTTTTTACCTTATGTTGANATCAATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_f23.b1 MSMg01no260_f23.b1 CHROMAT_FILE:
MSMg01no260_f23.b1 PHD_FILE: MSMg01no260_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:27 2005
         (630 letters)



>mm_chr1_149167304_149168333
          Length = 1030

 Score = 1180 bits (610), Expect = 0.0
 Identities = 625/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacaaatatccgaggaatgatacttaaatatggtgaaacagtgtcctcatgtgtgtaat 60
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacaaatattagaggaatgatacttaaatatggtgaaacagtgtcctcatgtgtgtaat 260

                                                                       
Query: 61  aggttgcttcctcatgtgtgtaattgcttgtgttaaggtcagtaggagaagaaagataaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aggttgcttcctcatgtgtgtaattgcttgtgttaaggtcagtatgagaagaaagataaa 320

                                                                       
Query: 121 aagcatagggaagagatatgatgcatttacatatccagtattttccttattttcttttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcatagggaagagatatgatgcatttacatatccagtattttccttattttcttttag 380

                                                                       
Query: 181 aattagaatttcttaatactttgtaaatttgagggggaaattattaacagaaaaataaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattagaatttcttaatactttgtaaatttgagggggaaattattaacagaaaaataaac 440

                                                                       
Query: 241 aaataatatagtctgtactaagataagttaatattactataaaatgatactttaggtaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataatatagtctgtactaagataagttaatattactataaaatgatactttaggtaca 500

                                                                       
Query: 301 tctgtatggaccatatattttgaagatgctaaaatatcatggcactaagttgcatagata 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtatagaccatatattttgaagatgctaaaatatcatggcactaagttgcatagata 560

                                                                       
Query: 361 gttctgttacccatattctctcttttctcaaatctagagaaaatgttctccaattttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttctgttacccatattctctcttttctcaaatctagagaaaatgttctccaattttata 620

                                                                       
Query: 421 cttcatttcctgtcagtcagaccttattatattgtaaattcagagaaacaatccatttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcatttcctgtcagtcagaccttattatattgtaaattcagagaaacaatccatttca 680

                                                                       
Query: 481 cgttgttaaaatgttcatatttgcttttgttaacaatttatcactcatttttttccatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgttgttaaaatgttcatatttgcttttgttaacaatttatcactcatttttttccatgt 740

                                                                       
Query: 541 tagtggaaaactaatgttttggttgcttctttctttacaaaaaaatatgatatacatttc 600
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagtggaaaactaatgttgtggttgcttctttctttacaaaaaaatatgatatacatttc 800

                                         
Query: 601 tccatgttttccatgataaaatattcattt 630
           ||||||||||||||||||||||||||||||
Sbjct: 801 tccatgttttccatgataaaatattcattt 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no260_f23.g1 MSMg01no260_f23.g1 CHROMAT_FILE:
MSMg01no260_f23.g1 PHD_FILE: MSMg01no260_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:27 2005
         (576 letters)



>mm_chr1_149324554_149325529
          Length = 976

 Score =  913 bits (472), Expect = 0.0
 Identities = 498/507 (98%)
 Strand = Plus / Minus

                                                                       
Query: 67  atttgtgctcaccatttatttcccaaggaacccagctaaactaaaaatttaacttcaggg 126
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 976 atttgtgctcaccatttatttcccaaggaacccagctaaactaaaattttaacttcaggg 917

                                                                       
Query: 127 gatgcttgccttgattataaattaagattcattttcttaaagggaattggaatatcttac 186
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 916 gatacttgccttgattataaattaagattcattttcttaaagggaattggaatatcttag 857

                                                                       
Query: 187 aaaatattggtggctttaggctatattatttctaaccactttggtgtatgaattaaatat 246
           ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 856 aaaatattggtggttttgggctatattatttctaaccactttggtgtattaattcaatat 797

                                                                       
Query: 247 aatttaattatattttaatatatccctaattttggctcaaatcttaaagataatcagaga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aatttaattatattttaatatatccctaattttggctcaaatcttaaagataatcagaga 737

                                                                       
Query: 307 aagtataagctataagtaattattgctcacattaaataatgtttagttaattcactaaaa 366
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 736 aagtataagctataagtaattattgctcacattaaataatgtgtagttaattcactaaaa 677

                                                                       
Query: 367 actaaaatctgtctatttctgttttctttagttttgcaagacaggcaataatgcatattt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 actaaaatctgtctatttctgttttctttagttttgcaagacaggcaataatgcatattt 617

                                                                       
Query: 427 tagtagaggttggttgattgcaaaatagctcccatagatcagaatttgatttctggtgtg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tagtagaggttggttgattgcaaaatagctcccatagatcagaatttgatttctggtgtg 557

                                                                       
Query: 487 ggcaattcaatgaatcatttattatatcatgcacaggtgttcattaggnaagtgtaatat 546
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 556 ggcaattcaatgaatcatttattatatcatgcacaggtgttcattaggaaagtgtaatat 497

                                      
Query: 547 tatagtggaaagagcagctattctctc 573
           |||||||||||||||||||||||||||
Sbjct: 496 tatagtggaaagagcagctattctctc 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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