BAC Information

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BAC

Clone NameMSMg01-260M21
Chromosome1 (Build37)
Map Location 31,183,207 - 31,392,896
singlet/doubletdoublet
Overlap gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260M21.T7 (MSMg01no260_m21.b1)MSMg01-260M21.TJ (MSMg01no260_m21.g1)
ACCAG403369AG403370
length746759
length of high quality
(start - end)		347 (74 - 420)673 (78 - 750)
definitionCHROMAT_FILE: MSMg01no260_m21.b1 PHD_FILE: MSMg01no260_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:01 2005CHROMAT_FILE: MSMg01no260_m21.g1 PHD_FILE: MSMg01no260_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(31,392,550 - 31,392,896)(31,183,207 - 31,183,879)
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGC
GGAATTCTCTGAACTGTCAACTTTGGGGGAAAATAATGACCCTGGGCCAT
TTTTAAATACTAGGAAGAAAATGAAGGACACAATATTCCTGTCTGTTTAA
CACAGATATAGCACGTTGTGCCAAGCCTTGCATCTGAACACCTTGAAAGC
ACTAAATCATTTGAATTAGAGGCTCTAATATTTCACCTTCAATAGCAAAC
ACCACAGCTGGGCTCCTCTTGCCTGCCTGTTCTATCACTTGGTGTGGGAA
TCCAGAGCTTCGCTATCTCCAGGGCAATATTCTTCCCTTCCCAAGCTCTT
CCTTCACTTACTACACTGTAGCTTCCTGAACTCCGCTCATCCATCTCCAC
TTTTCCTTGGAGTCCCATTATCTAAGCACTGTGGTGTCCAAGTGAGCCCT
TTGGTCCAATTTCTTGACACGCCTACTCTCTTAGACACTCCCACTCTCTT
AGAAATCCTGTGTATTCACTTGAACTCGTTTGACCTCCAACTTATATCCA
GAAAAGAAACTTGTCCTTTGAACTGCAGCCTTATTCAGTATCCTCCTAGA
CATCTCAGATTATACTGATGGGTAACAAAGATTTTAATAATAATGGAATA
CAAGCTGAGCTTTTTCACTTTTCCCTTATTTTGAAGTCATCCCCAGTCTC
ATCAAGCTACCTTTGTTCTCTAGCTTGCCTCTCCATATACTTTGTA

TTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATATGCACATGTTTATGAT
TTGTGCATGTACAAGCACTTTTGATACCACCACCACAATCACCAACATCT
CTAAACATTGCTTGAGTCCACTGAAGAACACTTGGCATCTATGTTCCTAA
CAGTTTTGTTATTTGCTTACTTGTTTGATTGGTTTTGTATTTCAAGATAG
AGTTTGTCTGGGTAGCCCTAGCTGCCCTGGAACTCACTCTGTAGTTCAGG
CTAGACTTAAACTCAGAGACCCACTTGCCTCTGTACCTGAGCCATTTTAC
CTGCTTCTGCAACAGCCTGTCTGTCAGGTAGAGTCAAGTCAGGCCAAGGT
CTGCTGGCAGTTTTTCTGGCCTGCTAATGCATGGAACCATAAGAGGGGAT
ATACTTGAAGCTCAAGGCAAGGGGATGAATGTTCTGTTAGTATTGGAGGA
AAGAACAAGGAGGAATAGGGAAGCCTCCAGATAGGTACAGATATTGAAGG
TACATCAGCTATGGTCTCTGCTGGCTTGTGACTTTGTTTTCCATAATTCT
GTAAAGTATATAAAGCCTGAAAGAATTAAACTCAAGGCTGCTGCAGTACT
GAGTGGACAGTCCTTCCAATTTCTAACCTTTGTCTCTGAGTCTTCTTTTC
TGCCTTTCCTAATAATCCTCACTCCCCCTCTGAGAGAACTGTTTACCTTC
GTACCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_m21.b1 MSMg01no260_m21.b1 CHROMAT_FILE:
MSMg01no260_m21.b1 PHD_FILE: MSMg01no260_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:01 2005
         (347 letters)



>mm_chr1_31392350_31393096
          Length = 747

 Score =  625 bits (323), Expect = 0.0
 Identities = 341/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggggaaaataatgaccctgggccatttttaaatactaggaagaaaatgaaggacacaa 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgggggaaaataatgaccctgggacatttttaaatactaggaagaaaatgaaggacacaa 488

                                                                       
Query: 61  tattcctgtctgtttaacacagatatagcacgttgtgccaagccttgcatctgaacacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tattcctgtctgtttaacacagatatagcacgttgtgccaagccttgcatctgaacacct 428

                                                                       
Query: 121 tgaaagcactaaatcatttgaattagaggctctaatatttcaccttcaatagcaaacacc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgaaagcactaaatcatttgaatcagaggctctaatatttcaccttcaatagcaaacacc 368

                                                                       
Query: 181 acagctgggctcctcttgcctgcctgttctatcacttggtgtgggaatccagagcttcgc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 367 acagctgggctcctcttgcctgcctgttctatcacttggtgtgggaatccggagcttcgc 308

                                                                       
Query: 241 tatctccagggcaatattcttcccttcccaagctcttccttcacttactacactgtagct 300
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tatctccagggcaacactcttcccttcccaagctcttccttcacttactacactgtagct 248

                                                          
Query: 301 tcctgaactccgctcatccatctccacttttccttggagtcccatta 347
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcctgaactctgctcatccatctccacttttccttggagtcccatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no260_m21.g1 MSMg01no260_m21.g1 CHROMAT_FILE:
MSMg01no260_m21.g1 PHD_FILE: MSMg01no260_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:01 2005
         (673 letters)



>mm_chr1_31183007_31184079
          Length = 1073

 Score = 1294 bits (669), Expect = 0.0
 Identities = 672/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatatgcacatgtttatgatttgtgcatgtacaagcacttttgataccaccaccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatatgcacatgtttatgatttgtgcatgtacaagcacttttgataccaccaccaca 260

                                                                       
Query: 61  atcaccaacatctctaaacattgcttgagtccactgaagaacacttggcatctatgttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaccaacatctctaaacattgcttgagtccactgaagaacacttggcatctatgttcc 320

                                                                       
Query: 121 taacagttttgttatttgcttacttgtttgattggttttgtatttcaagatagagtttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacagttttgttatttgcttacttgtttgattggttttgtatttcaagatagagtttgt 380

                                                                       
Query: 181 ctgggtagccctagctgccctggaactcactctgtagttcaggctagacttaaactcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggtagccctagctgccctggaactcactctgtagttcaggctagacttaaactcaga 440

                                                                       
Query: 241 gacccacttgcctctgtacctgagccattttacctgcttctgcaacagcctgtctgtcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacccacttgcctctgtacctgagccattttacctgcttctgcaacagcctgtctgtcag 500

                                                                       
Query: 301 gtagagtcaagtcaggccaaggtctgctggcagtttttctggcctgctaatgcatggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagagtcaagtcaggccaaggtctgctggcagtttttctggcctgctaatgcatggaac 560

                                                                       
Query: 361 cataagaggggatatacttgaagctcaaggcaaggggatgaatgttctgttagtattgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cataagaggggatatacttgaagctcaaggcaaggggatgaatgttctgttagtattgga 620

                                                                       
Query: 421 ggaaagaacaaggaggaatagggaagcctccagataggtacagatattgaaggtacatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaagaacaaggaggaatagggaagcctccagataggtacagatattgaaggtacatca 680

                                                                       
Query: 481 gctatggtctctgctggcttgtgactttgttttccataattctgtaaagtatataaagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctatggtctctgctggcttgtgactttgttttccataattctgtaaagtatataaagcc 740

                                                                       
Query: 541 tgaaagaattaaactcaaggctgctgcagtactgagtggacagtccttccaatttctaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaagaattaaactcaaggctgctgcagtactgagtggacagtccttccaatttctaac 800

                                                                       
Query: 601 ctttgtctctgagtcttcttttctgcctttcctaataatcctcactccccctctgagaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctttgtctctgagtcttcttttctgcctttcctaataatcctcactccccctctgagaga 860

                        
Query: 661 actgtttaccttc 673
           ||||||| |||||
Sbjct: 861 actgtttgccttc 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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