BAC Information

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BAC

Clone NameMSMg01-261C06
Chromosome1 (Build37)
Map Location 4,738,390 - 4,738,808
singlet/doubletsinglet
Overlap geneLOC100039121
Upstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980
Downstream geneLOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261C06.T7 (MSMg01no261_c06.b1)MSMg01-261C06.TJ (MSMg01no261_c06.g1)
ACCAG403611AG403612
length739720
length of high quality
(start - end)
231 (81 - 311)412 (79 - 490)
definitionCHROMAT_FILE: MSMg01no261_c06.b1 PHD_FILE: MSMg01no261_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:27 2005CHROMAT_FILE: MSMg01no261_c06.g1 PHD_FILE: MSMg01no261_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTG
GGCGGAATTCTCTGGTTTGCAATAGAAAGCATTTTCTAATAGGGNTATTT
TGTTCTCTGGAGTCTAACTTCTTGACCTCTTTGTATATATTGGATATTAG
CCTTCTATCAGATATAGGATTGGTAAAGATCTTTTTCCAATAAAATTACT
TCTTTAAATATTGAATTTGAGAAACATTTAGAAATCTTTTGTTGCTGTTG
TTGTTGTTGGTGTATTTTTGAAATAGGTCTCACTATGTAGCTCTGGCCAT
TCTCACTAAGAAGACCAGGTTTGTTTCTTTTTCCAAGAGANCCTCCTGAC
ACTGCCTCCCTTGTGTTTGAATTCCCCCCTCTGCCACAACATCTGGCTAA
TCTTTATGATTCTTCCTTAAAAGTTTTACATACAATTTATCAGTCTAAAT
TTAAACTTGAGATTCCTGTTTCATTCTCCTAAATGCAGGTAACTCATGAC
CCTCTTAGCATTTATAAACTCTATATAAAAGCATCTTTTGTATTTGAACT
CGGTAGTTTGGATATAATCGCCCTTTTACTTATTTTTCAGTATTTAACGA
GAATCCATCGTGACGTGTCTGCGCAGGAATATTACCCCAACCTTCTCCTC
CAAAACCCGGATTTTTTCTTTCTTTTCAACATCTATAATATGAACAGCTT
CTTCCTTATTTACCCATTTTTTATCCTATTTTTTTATTT
NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATCTTAAATGTAGAGCTT
GGGGTCCACTCACAGGGGAACCATGTATATCAAAAAGTCAAGGGAAAATA
CTTTTTAACTTTTAGGATTTGACGTTGAAATGCCTGACAAAGGCTTATGT
TACGGGCTTCACGGTCAGCGGACTGCGCTGTGGAACTGTTAGCTATGAGG
CTCTGGTTGAGTCAGTGAGGAGGCTCACTGATGGATTGAAGTGGTGAAGA
ATGGGCCCTAGCTGGAAGGAGCAGTGCCCCTGAGTGTTTGCTCTAGAACT
GTAGAAATGTATGTCCTCTACTGAACCCATTTCTTGGTCATTCTGCTTCC
CAGCTCAATGCAGTATGTGACTTTGTCCCATCACTGTTTCTGTGATATTC
AGCCTTTTCTCAGGCCAAGCTGTGAAACCAAACTGCCATGAACTGAGGCC
ACGAAATCACACGCCACAAAGAAATGCCTCCTCCTTCTGTCGCTTTCTAT
TTCTTAGGATTTTCCCTCTTCCTCTTCTTCCTCCTTTGCCATGATGTTAG
AAGCCTCTACCAATTTCCACGCCAAATTGCTTTCAACCCACTCCGCCGAC
ACCTACCTTCCCCTCATGTATAATTTCTCTCCTCCCCTTCCCTCTTTCAA
CAACCTTTTACACCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_c06.g1 MSMg01no261_c06.g1 CHROMAT_FILE:
MSMg01no261_c06.g1 PHD_FILE: MSMg01no261_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:27 2005
         (412 letters)



>mm_chr1_4738266_4739076
          Length = 811

 Score =  716 bits (370), Expect = 0.0
 Identities = 404/420 (96%), Gaps = 9/420 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttatcttaaatgtagagcttggggtccactcacaggggaaccatgtatatcaaaaagt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 543 ctttatcttaaatgtagagcttggggtccactcacaggggagccatgtatatcaaaaagt 484

                                                                       
Query: 61  caagggaaaatactttttaacttttaggatttgacgttgaaatgcctgacaaaggcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caagggaaaatactttttaacttttaggatttgacgttgaaatgcctgacaaaggcttat 424

                                                                       
Query: 121 gttacgggcttcacggtcagcggactgcgctgtggaactgttagctatgaggctctggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gttacgggcttcacggtcagcggactgcgctgtggaactgttagctatgaggctctggtt 364

                                                                       
Query: 181 gagtcagtgaggaggctcactgatggattgaagtggtgaagaatgggccctagctggaag 240
           |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||
Sbjct: 363 gagtcagtgaggaggctcactggtggattgaagtggtgaagagtgggcccgagctggaag 304

                                                                       
Query: 241 gagcagtgcccctgagtgtttgctctagaactgtagaaatgtatgtcctctactgaaccc 300
           |||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 303 gagcag-gccactgagtgtttgctctagaactgtagaaatgtatgtcctatactgaaccc 245

                                                                       
Query: 301 atttcttggtcattctgcttcccagctcaatgcagtatgtgact--------ttgtccca 352
           ||||||||||||||||||||||||||||||||||||||||||||        |||| |||
Sbjct: 244 atttcttggtcattctgcttcccagctcaatgcagtatgtgactatgtgactttgttcca 185

                                                                       
Query: 353 tcactgtttctgtgatattcagccttttctcaggccaagctgtgaaaccaaactgccatg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcactgtttctgtgatattcagccttttctcaggccaagctgtgaaaccaaactgccatg 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space:   323206
Effective search space used:   323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)