Query= MSMg01no261_e15.b1 MSMg01no261_e15.b1 CHROMAT_FILE:
MSMg01no261_e15.b1 PHD_FILE: MSMg01no261_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:38 2005
(666 letters)
>mm_chr1_107361381_107362445
Length = 1065
Score = 1218 bits (630), Expect = 0.0
Identities = 654/662 (98%), Gaps = 1/662 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttacgtttccaatctcatatgaattcctcccccataacattccccttctgtt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttacgtttctaatctcatatgaattcctcccccataacattccccttctgtt 263
Query: 64 cttagaaacactttctgagcctatgatgtaatgcagatacagtctcagatttaattcttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttagaaacactttctgagcctatgatgtaatgcagatacagtctcagatttaattcttt 323
Query: 124 agtttgtcagttctaagacactcttaactctgacctatatctggctttgtaaacagcaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtttgtcagttctaagacactcttaactctgacctatatctggctttgtaaacagcaaa 383
Query: 184 ggaagaaaagaaaaaaaaaactattatctaaactatgcaagttctctccctcaccctctc 243
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaagaaaag-aaaaaaaaactattatctaaactatgcaagttctctccctcaccctctc 442
Query: 244 cctctcttatttcctccctctcctttcccactgtctctctgtctatgtgtgtgttcatgt 303
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 443 cctctcttatttcctccctctcctttgccactgtctctctgtctgtgtgtgtgttcatgt 502
Query: 304 gtgcatttgtgtgtgtacatgtttgtgttgcacatagtccaagcatattttcttttttat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgcatttgtgtgtgtacatgtttgtgttgcacatagtccaagcatattttcttttttat 562
Query: 364 aagacattttctttatttggatttcaaatgttattccctttccttgtttcccctcctaaa 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagacattttctttatttggatttcaaatgttattccctttccttgtttcccctcctaaa 622
Query: 424 acccccattccttccctctttcctactcaccaacacacacattcctactttcctgtcctg 483
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 accctcattccttccctctttcctactcaccaacacacacattcctactttcctgtcctg 682
Query: 484 gcattctcctacactggagcatagagccttcacagtaccaagatcctctgctctcattga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcattctcctacactggagcatagagccttcacagtaccaagatcctctgctctcattga 742
Query: 544 tgcccaacaaagccatcctctacgacatatgcaactggagtcatggatccctctgtgtgt 603
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgcccaacaaagccatcctctactacatatgcaactggagtcatggatccctctgtgtgt 802
Query: 604 actctttggttggtggtttagtccttggaagatctgggggtactggatggtttgtattgt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 actctttggttggtggtttagtccttggaagatctgggggtactggatggtttgtattgt 862
Query: 664 tg 665
||
Sbjct: 863 tg 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_e15.g1 MSMg01no261_e15.g1 CHROMAT_FILE:
MSMg01no261_e15.g1 PHD_FILE: MSMg01no261_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:38 2005
(575 letters)
>mm_chr1_107516722_107517696
Length = 975
Score = 895 bits (463), Expect = 0.0
Identities = 478/485 (98%), Gaps = 4/485 (0%)
Strand = Plus / Minus
Query: 1 ctagtcacactaacaattcctttgtcaggtctgtttttctctgctctaaggtgccacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctagtcacactaacaattcctttgtcaggtctgtttttctctgctctaaggtgccacatg 426
Query: 61 tgaggtcccagccatatcctgaaccagcatgtctctctaaagaccaggtgcagtggttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaggtcccagccatatcctgaaccagcatgtctctctaaagaccaggtgcagtggttct 366
Query: 121 tgactgaatacttacttgttcctcttgttgctctctttatggccccatctgttccaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 365 tgactgaatacttacttgttcctcttgttgctctctttatggccccatctgttcccaaat 306
Query: 181 gccctctgagtagctctgattgtatttctagctttgtggtctgatcacaggagtttctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gccctctgagtagctctgattgtatttctagctttgtggtctgatcacaggagtttctgt 246
Query: 241 gagttctagctattcctgtgtttacacattttaaaaagatttgcctattcttattttgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagttctagctattcctgtgtttacacattttaaaaagatttgcctattcttattttgtg 186
Query: 301 tatgag----ggcttacctacatgtctgtatatgtactgcatgtatacctgaagctcata 356
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 185 tatgagggctggcttacctacatgtctgcatatgtactgcatgtatacctgaagctcata 126
Query: 357 gagaccagaaaaggaactttatcccgtggacctggagttgcagctgttgggagccacttt 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 125 gagaccagaaaaggaactttatcccgtggaactggagttgcagctgttgggagccacttt 66
Query: 417 gtgagacatagaatctgagtcctctgcaagaacagccagggctcttaaccactaagccat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gtgagacatagaatctgagtcctctgcaagaacagccagggctcttaaccactaagccat 6
Query: 477 ctctc 481
|||||
Sbjct: 5 ctctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
