Query= MSMg01no261_f07.b1 MSMg01no261_f07.b1 CHROMAT_FILE:
MSMg01no261_f07.b1 PHD_FILE: MSMg01no261_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:41 2005
(617 letters)
>mm_chr1_50790581_50791596
Length = 1016
Score = 1123 bits (581), Expect = 0.0
Identities = 610/623 (97%), Gaps = 7/623 (1%)
Strand = Plus / Plus
Query: 1 aatgcattt------aaaaaatactctttatgtcatattatacactatgaaaactggcgc 54
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 195 aatgcatttttttaaaaaaaatactctttatgtcatattatacactatgaaaactggagc 254
Query: 55 ttggtctcaaggagtttactgtgaaaactgcacatttttttatatcattacacacaatca 114
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 255 ttggtctcaaggagtttactgtgaaaactgcacatttttt-atatcattacacacaatca 313
Query: 115 aatggcccagtaggtacttagtgatacaggactctatagatcattccagcagtaactacc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aatggcccagtaggtacttagtgatacaggactctatagatcattccagcagtaactacc 373
Query: 175 aaaacatagctatttgtattatcatagttcaatcctaatgctattgcatatagcctttca 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaacatagctatttgtattatcatagttcaatcctaatgctattgcatatagcctttca 433
Query: 235 cataatgccaatgcaacatgaggaaaaaaatatgcaatgagaggaataagaacttatttt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cataatgccaatgcaacatgaggaaaaaaatatgcaatgagaggaataagaacttatttt 493
Query: 295 ctaatatacacacacatgcaaaaacacacacaaacacatgctcacatacacatacagtag 354
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 caaatatacacacacatgcaaaaacacacacaaacacatgctcacatacacatacagtag 553
Query: 355 tatatataaagttaaaaatatgtacaaccatacattatgacttattttaacttgaaggag 414
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 554 tatatataaagttaaaaatatgtacaaccatacattaagacttattttaacttgaaggag 613
Query: 415 aaaagggactatgtgatcgtttagcatttttttcttctcatataaatgcagattctagtc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aaaagggactatgtgatcgtttagcatttttttcttctcatataaatgcagattctagtc 673
Query: 475 tctagtgacatatatattattgaaatcgggtcaaatttgaattttggctatcttacagcc 534
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 674 tctagtgacatatatattactgaaatcgggtcaaatctgaattttggctatcttacagcc 733
Query: 535 cagatatcaggtgtgtctctgtcagccagacactatctaattcattgaaatcgctatgca 594
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 734 cagatatcaggtgtgtctctgtcagccagacattatctaattcattgaaatcgctatgca 793
Query: 595 aacatcaatactgtttatttaaa 617
|||||||||||||||||||||||
Sbjct: 794 aacatcaatactgtttatttaaa 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1016
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1006
Effective search space: 610642
Effective search space used: 610642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_f07.g1 MSMg01no261_f07.g1 CHROMAT_FILE:
MSMg01no261_f07.g1 PHD_FILE: MSMg01no261_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:42 2005
(480 letters)
>mm_chr1_50944794_50945668
Length = 875
Score = 824 bits (426), Expect = 0.0
Identities = 460/480 (95%), Gaps = 16/480 (3%)
Strand = Plus / Minus
Query: 1 ctctgcacttcccagcccagtgtccagaagtgggctctgcaagcagtctggtacagctac 60
|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 531 ctctgcacttcctagcccagtgtcgagaagtaggctctgcaagcagtctggtacagctac 472
Query: 61 tggggagcaggaagtgctctaaagtgacctgttatctccatattacatgctctcagacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tggggagcaggaagtgctctaaagtgacctgttatctccatattacatgctctcagacca 412
Query: 121 gtgatatcagaggcttcatatcagttgcacaacactgacttactgcaaacaagcagaaga 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 411 gtgatatcagaggcttcatatcagttgcacaacact----tactgcaaacaagcagaaga 356
Query: 181 gtgcatgaggatgtgggtaatagatgtgagaagatgacatcaatggcaaatcagtgctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtgcatgaggatgtgggtaatagatgtgagaagatgacatcaatggcaaatcagtgctat 296
Query: 241 ttcacaggatgcccagatgaagagctgagaatgaatttaatctttcattcaaggtaggaa 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 295 ttcacaggatgcccagatgaagagctgagaatgaatt-aatctttcattcaaggtaggaa 237
Query: 301 gaaatcttgaaagattctggataaagaattcatgtgttaatacactgaccatatgcttag 360
||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 236 gaaatcttgaatgattctggataaagaattcatgtg-----------accatatgcttag 188
Query: 361 aatatttagtaatagtttcaggtattttagtaataatttctaagacatcactatctctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aatatttagtaatagtttcaggtattttagtaataatttctaagacatcactatctctgc 128
Query: 421 taatatttagtgcctccatcttcataaaagaacatttacatcttaagtagcataaatgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 taatatttagtgcctccatcttcataaaagaacatttacatcttaagtagcataaatgcc 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 875
Length adjustment: 10
Effective length of query: 470
Effective length of database: 865
Effective search space: 406550
Effective search space used: 406550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
