BAC Information

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BAC

Clone NameMSMg01-261K01
Chromosome1 (Build37)
Map Location 71,964,056 - 71,964,546
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931
Downstream geneEG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261K01.T7 (MSMg01no261_k01.b1)MSMg01-261K01.TJ (MSMg01no261_k01.g1)
ACCAG403958AG403959
length798745
length of high quality
(start - end)
231 (127 - 357)499 (77 - 575)
definitionCHROMAT_FILE: MSMg01no261_k01.b1 PHD_FILE: MSMg01no261_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:03 2005CHROMAT_FILE: MSMg01no261_k01.g1 PHD_FILE: MSMg01no261_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGAATTCTCGCCCAGTCCCAGCCAGTGGAAAAGCCTTGAAATCTCT
ATTGAATTGGTTTCAAGACTAACACAAGAAGGCTCCAGCGAGCTTTAGGC
CTAACTAGGGATGACTCTGAGTTAAGTCCATGGTTACTTTGTCCTGATAT
TTTGCTATATTGCATGGGCATTCTCATTGAATGCAACATGGCTTCCCACT
TAGAAGGTCAGACTGTGTCAGTAAGAGGAGAGAGAAAAGGAAGTAGTGGA
GTGAAAGGCTGCCTGAGAGAAACAGGTGGCCTTGCAGGAGGACCCAGGGC
CTGGGAGTATATGAGAGCCAAGGAGGCTTGTCCGTGGGAGGACTTGTGGT
GTTAGGCTATCAGCACCACCATATTAGATTATTTAGGATGAGCTGGAGCA
CAGCCATGGTGGCACATTCCCTTANTGCCAGTACTTGTTAGCCAGAGGCA
GGTAGATCTCTAAGTTTCAGGTCAGCCTGATCTTCATATTACAATTTCTG
GACCGCCTAGTGCTCTCAGATAAATCCTATCTCTAATATAGCAACTGTAT
CCGACCACTTTATGTTTAAGTCTGGCCCCATATTAGAGCACGCAGAAGGC
TATGTGTTCTTTCCTTCTGACTCTAACGCTAATTACATACTTTTTTATCT
CATCTTACGTATTTTTTCCCTTTTTCTAATCCCCTATTGTTTGTGTCCTG
CGTGCTCATTCTCTGTTTCTCTTTACTTAACTCCTTTGCGATTATATG
ACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTAAGGGATATACAGAG
AAACCCTGTCTTGAAACAAACAAACAAACAAACAAACAAACAAACAAGAA
ATATAATAGATTGCATTTTAATATGAGGTGATTCTAGTTACAGGCAAGTG
GCAGGTGATAGAACCCTTTCTTCCCTAGCTCGTGGCTGACGTCTGTCCAT
CTCAGAACACGGGGAGAGTTGAGAAGTTACAAGTAGTTTGCTATATGACT
GAGTCCATGAGCCTGGAATTAGATATTATCTGAGGCTGTGTCCTAGCCCA
ATCAATGTGGGACTTGGGGAAGGGACAAATCCTAGCCTACAGAAGAAAAG
GACAGGAATTTATTGACTCCTGATTGCCAGATTTTTAAGCCAGTTTGTTC
CCAATCAGTACACCATTCAGTTTTGCCTTTTCTCTAAGACACCGTCCCTT
TCTATAGAACTGTAAATTAGGAACTGCTTCATTTTCACTTGTCTCCTGAA
TTTATTCTCATCTTATTTCCAACAGGTATAGACATCCATGCAAATGCTTT
TTCCCCCATCCTAAGGTTTTCACTATGATAGATGGAACATAGCCTTCAGC
GCTGATTATCTTTCCTACCCGCTCACTATATTTATTTTTTGCCCCTTATT
CTATCACCTTTTTTGCCCTTTCTTAATGCTATCCCCTTCTCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_k01.g1 MSMg01no261_k01.g1 CHROMAT_FILE:
MSMg01no261_k01.g1 PHD_FILE: MSMg01no261_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:03 2005
         (499 letters)



>mm_chr1_71963785_71964683
          Length = 899

 Score =  899 bits (465), Expect = 0.0
 Identities = 487/499 (97%), Gaps = 8/499 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagtaagggatatacagagaaaccctgtcttgaaacaaacaaacaaacaaacaaa 60
           |||||||||||||||||||||||||||||||||||||        |||||||||||||||
Sbjct: 762 caggacagtaagggatatacagagaaaccctgtcttg--------aaacaaacaaacaaa 711

                                                                       
Query: 61  caaacaaacaagaaatataatagattgcattttaatatgaggtgattctagttacaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 caaacaaacaagaaatataatagattgcattttaatatgaggtgattctagttacaggca 651

                                                                       
Query: 121 agtggcaggtgatagaaccctttcttccctagctcgtggctgacgtctgtccatctcaga 180
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 650 agtgggaggtgatagaaccctttcttccctagctcgtggccgacgtctgtccatctcaga 591

                                                                       
Query: 181 acacggggagagttgagaagttacaagtagtttgctatatgactgagtccatgagcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acacggggagagttgagaagttacaagtagtttgctatatgactgagtccatgagcctgg 531

                                                                       
Query: 241 aattagatattatctgaggctgtgtcctagcccaatcaatgtgggacttggggaagggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aattagatattatctgaggctgtgtcctagcccaatcaatgtgggacttggggaagggac 471

                                                                       
Query: 301 aaatcctagcctacagaagaaaaggacaggaatttattgactcctgattgccagattttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 470 aaatcctagcctacagaagaaaaggacaggaatttattgactcctgattgggagattttt 411

                                                                       
Query: 361 aagccagtttgttcccaatcagtacaccattcagttttgccttttctctaagacaccgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aagccagtttgttcccaatcagtacaccattcagttttgccttttctctaagacaccgtc 351

                                                                       
Query: 421 cctttctatagaactgtaaattaggaactgcttcattttcacttgtctcctgaatttatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cctttctatagaactgtaaattaggaactgcttcattttcacttgtctcctgaatttatt 291

                              
Query: 481 ctcatcttatttccaacag 499
           |||||||||||||||||||
Sbjct: 290 ctcatcttatttccaacag 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)