BAC Information

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BAC

Clone NameMSMg01-261N06
Chromosome1 (Build37)
Map Location 154,042,351 - 154,042,602
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
Downstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261N06.T7 (MSMg01no261_n06.b1)MSMg01-261N06.TJ (MSMg01no261_n06.g1)
ACCAG404099AG404100
length761840
length of high quality
(start - end)
252 (70 - 321)145 (71 - 215)
definitionCHROMAT_FILE: MSMg01no261_n06.b1 PHD_FILE: MSMg01no261_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:18 2005CHROMAT_FILE: MSMg01no261_n06.g1 PHD_FILE: MSMg01no261_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAAT
TCTCTCTTCATTCTCATTTCTTTACTTTGCTCTCTCTCTCTTCCTCCTCC
TCTTCCTCCACCTCCTTCTTCCTCTCCCTTCTCTCTCCCCATTCACACCA
GCAATGCCAGAATGCCAGAATGAATGAAAGAATTTTTCACACTTCTTTAA
GAGACACAGATATAATTTGTGTCACCATTTTAATTGCCGGTCTTAATTAA
ATGATTAATTCGTGTCTGAAATAAAAATGTGAAGACATTAGCATATTGTG
AGTGTTCACCTTGTGGCAACACTACAATCAGAAACATACTCTACCCAACG
GATCTGTATGCTGTCCAAGTCTTCAGTGTGGCTTTTCCTTGGACCCTCTT
TTCAAGATTTCCAGAAGGGTCTACAAGAAAAATGTATGCTTTCACAGAAA
CCTCCCTCACCAAATTACTTTGCTAAAATTACCATTAAAGTGTGCAAGGA
CAGACATTCTGCCACTCATAAAAAGCCTTCTTCTCCAGTGTCTTTCTAGG
CCGGATCCAAGGAAATCCAAGGTCTTGACCGCCCCCTCTGAATACTGTGT
GATCTGAATTGGCCCAGAAGAAACAACCTTTTCTTTAATATTTCACGGCC
CACATATTCTCGAATACCGTTAAGAAAAAACCCCTTTGCTGGCACTAATG
GTGGCCAAACTTTGTAATTTCTTTCAAAAAGAACATTAGTAAATTCGGCC
TTTTTACTCCG
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGCAATGTGGGCCCTTCCACAGGGCAGT
TCGAGTCAACTCATGTTGTGGCGGCTGGCTTCACTTGGAAGGAGTGACAG
GGGTAGGGGGAGAGAATAAGAAGAAGAGAGGGAAGGAGAGGCGAGAGCAG
GGAGGGAGGATTTCTTGTCTGCCCGTTCTATCATGTCTCCCAGCTATTCT
TTGTGTATCTGCGTATGTCGCGTGTGTCTTCCCATGTTTCCTTATGCCCT
ACCCCTTCTCCTTCGACTGTTTTTTGTTCCCTTTCCTAGCCCCTTTTTTT
TCCCTCTACCTCTTTTCCCTTCTCTCCCCCCTCCCTCCCCCCTTTCATTT
TTTCCTACACTTACTTGCCCCGTTTTCGTTTTCCCCCCCCCTTTTTTTGT
TATTCCCCTTGCTTTTCCCTCCCCTCTTTTCGCCCTCGCCCCCCCCTCCC
CTCTCCTTTTATTCCCTTACCCTCTTCCCCTTCCCTTTCTCCCCCCCCTT
TCCCTTCTCCCGCCCTTTTCTTCCCCCACTTCTCCCCTTCGTTGCTTACA
CATTTTCGCCATTCTCTCCCCTTTTTCCTCTTTTTTTCCTCCCTTGCCCT
TCTACCTTTCTCTCCCCCACTCCTGTCTTTTCTCGTCCCCCCCCCTACAT
AACTCTCTACTACAGTCTCCCCCTTTCCTCCCACGCACATGCCTACCCCC
CTTTCTCCTTTTTTTGTATCTACTCCCGCCGCTTTGCGCGGCGTGCCACC
TCTTTTGTACTTTTCTCTCTCTTATCCCGCCTGTTGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_n06.b1 MSMg01no261_n06.b1 CHROMAT_FILE:
MSMg01no261_n06.b1 PHD_FILE: MSMg01no261_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:18 2005
         (252 letters)



>mm_chr1_154042151_154042802
          Length = 652

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttactttgctctctctctcttcctcctcctcttcctccacctccttcttcctctccct 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttattttgctctctctctcttcctcctcctcttcctccacctccttcttcctctccct 260

                                                                       
Query: 61  tctctctccccattcacaccagcaatgccagaatgccagaatgaatgaaagaatttttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctctccccattcacaccagcaatgccagaatgccagaatgaatgaaagaatttttca 320

                                                                       
Query: 121 cacttctttaagagacacagatataatttgtgtcaccattttaattgccggtcttaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttctttaagagacacagatataatttgtgtcaccattttaattgccggtcttaatta 380

                                                                       
Query: 181 aatgattaattcgtgtctgaaataaaaatgtgaagacattagcatattgtgagtgttcac 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aatgattaattcgtgtttgaaataaaaatgtgaagacattagcatattgtgagtgttaac 440

                       
Query: 241 cttgtggcaaca 252
           ||||||||||||
Sbjct: 441 cttgtggcaaca 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)