Query= MSMg01no262_c09.b1 MSMg01no262_c09.b1 CHROMAT_FILE:
MSMg01no262_c09.b1 PHD_FILE: MSMg01no262_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:43 2005
(571 letters)
>mm_chr1_131532446_131533412
Length = 967
Score = 891 bits (461), Expect = 0.0
Identities = 530/568 (93%), Gaps = 28/568 (4%)
Strand = Plus / Minus
Query: 5 gaattcaaccagcagagtacagagtaccagcatgatatacatttntctggaaaaaggtaa 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 594 gaattcaaccagcagagtacagagtaccagcatgatatacattt-tctggaaaaaggtaa 536
Query: 65 gagaaagagagaatttaactagaaaactgtaattgatatcagtacatgaaatagtatgag 124
|||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 535 gagaaagagagaatttaattagaaaactataattgatatcagtacatgaactagtatgag 476
Query: 125 aaatggtgagaaaaaaatggtaaattgaagaaacaaattgcatttccaaatagattgaac 184
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 475 aaatggtgag-agaaaatggtaaatcgaagaaacaaattgcatttccaaatagattgaac 417
Query: 185 atgaggtaagagccaatgatagcaaactaccaagcatacattactattttattaggtaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atgaggtaagagccaatgatagcaaactaccaagcatacattactattttattaggtaga 357
Query: 245 aagatgattataggactcttggaacattaagaaaccctctaaggacctgag-gaaacagt 303
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 356 aagatgattataggactcttggaacattaagaaaccctctaaggacctg-gtgaaacagt 298
Query: 304 gaagaatacaatgtgggctacactaaatttaaaatgtctacagattattcaaacagtagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaagaatacaatgtgggctacactaaatttaaaatgtctacagattattcaaacagta-- 240
Query: 364 ataggcatctgggtcagagttccaaatctataaagtgttggtacaacatgggcaaagcat 423
| ||||||||||||||||||||||||||||| |||||||
Sbjct: 239 acaggcatctgggtcagagttccaaatctat----------------------aaagcat 202
Query: 424 gtccagagtcataaatattattaaaacctaaagaatagcacaccattggatacataagcc 483
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gtccagagtcacaaatattattaaaacctaaagaatagcacaacattggatacataagcc 142
Query: 484 caagagtctattgtatagagtggtgactacagttagtaactgtcatgcttganaatggct 543
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 141 caagagtctattgtatagagtggtgactacagttagtaactgccatgcttgaaaatggct 82
Query: 544 aaaggtaatatattagggattctcacca 571
||||||||||||||||||||||||||||
Sbjct: 81 aaaggtaatatattagggattctcacca 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 967
Length adjustment: 10
Effective length of query: 561
Effective length of database: 957
Effective search space: 536877
Effective search space used: 536877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_c09.g1 MSMg01no262_c09.g1 CHROMAT_FILE:
MSMg01no262_c09.g1 PHD_FILE: MSMg01no262_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:43 2005
(629 letters)
>mm_chr1_131504576_131505603
Length = 1028
Score = 1042 bits (539), Expect = 0.0
Identities = 605/627 (96%), Gaps = 1/627 (0%)
Strand = Plus / Plus
Query: 1 ctttgcttgtggccctgcatcattacaacctctgctatccttaaatcccatttgactatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgcttgtggccctgcatcattacaacctctgctatccttaaatcccatttgactatg 260
Query: 61 cccctctgtctcttcttttacactgagattacactctgcccacttggattttctaaagtc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cccctctgtctcttcttttacactgagatttcactctgcccacttggattttctaaagtc 320
Query: 121 atcaccataacaggaccctatatgcattatatgtgctatgtccctttggacatgtaaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaccataacaggaccctatatgcattatatgtgctatgtccctttggacatgtaaact 380
Query: 181 tttcatgttcatagatactaagaaatggtggggttattaaaagagatttttttcacccga 240
|| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| |
Sbjct: 381 ttgcatgttcatagatactaagaaatggtggggtgattaaaagag-gtttcttcacccaa 439
Query: 241 ggcaaatgggccaggtcatagatcaagtactctatgttatcattaagtccctcataatct 300
||||||||| | ||||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct: 440 ggcaaatggtcgaggtcatagatcaagaactctgtgttatcattaagtcccttataatct 499
Query: 301 ggaaaatgccaataactggatgcagacaagaaatggaaatgcaaatgcctccaatccaaa 360
|||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 500 ggaaaatgccaaaaactggaagcagacaagaagtggaaatgcaagtgcctccaatccaaa 559
Query: 361 tgaggaagttacctgctgaagcaaaccacagctcaaatctcatggaggagtaacagttta 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 tgaggaagttacctgctgaagcaaaccacagctcaaatctcgtggaggagtaacagttta 619
Query: 421 cagccaaatgtgagagaccagggcctggaaatgaggatttgggttatccatgttctcatg 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 cagccaaatgtgagagaccagggcctggaaatgaggatttgggttatccgtgttctcatg 679
Query: 481 tagaagtaactacatgatattttagttgttgaacaaagaaaagggcatcgctattgtagg 540
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 680 tagaagtaactacatgatattttagttgttgaacaaagaaaggggcattgctattgtagg 739
Query: 541 tttcagattatatttggtgggagatagtggcttcctacaaatatatagtgcatttttgtt 600
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 740 tttcagattttatttggtgggagatagtggcttcctacaaatatacagtgcatttttgtt 799
Query: 601 tgtttgttttatattcacaggaatggg 627
|||||||||||||||||||||||||||
Sbjct: 800 tgtttgttttatattcacaggaatggg 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space: 630142
Effective search space used: 630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
