BAC Information

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BAC

Clone NameMSMg01-262J12
Chromosome1 (Build37)
Map Location 114,413,037 - 114,413,522
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262J12.T7 (MSMg01no262_j12.b1)MSMg01-262J12.TJ (MSMg01no262_j12.g1)
ACCAG404651AG404652
length758718
length of high quality
(start - end)
296 (71 - 366)482 (79 - 560)
definitionCHROMAT_FILE: MSMg01no262_j12.b1 PHD_FILE: MSMg01no262_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:17 2005CHROMAT_FILE: MSMg01no262_j12.g1 PHD_FILE: MSMg01no262_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGA
ATTCAGCAGTATTTTCCACTTACCCTGTACTGGTTTTGGTTGGAAATTTT
TTTAATGGTTACTTTTATTTCGCCATGGGTAATAGTACTATTTGAAATAT
TTACCTCATTTTCATTTAACTTTGGTAAATGGCAACTATTAAAAAAAATT
ATCCCTTTCATTTACATATTCTAATTTTGTTGAGGTTAGGCTTTCAAAGT
AAAACCTAATGATTCTTTTGAATTCTTCAATGTCTGTTGTTACATTGCCC
TTTTCATTCCTGATTTTGTTATATTTTGATACTATCCCTCTGTCTTTTAG
TTAGTTAGGCTAAGAGTTTCACTACCCCGCCGATTTTTATCAAAGAATCT
GTTCTCATTGTTTCTAATTACTTGATTTCAGTCCTGAATTTGATTACTTG
CTGCCATCTACTGTACCTATGTGTTCCTACTTCTATTTGATTTAGACTTC
TCTGGCTGTTTAGAATGCTCTAACGACATCTTTACAGTCACCCTTATTAC
GTTATTCAACGATCTATCCTTCCTTTCATGGCATTGCCCACACATGTTTT
TTCATAAATATACGGTCACCCCTCGATCCCTACCATGTATTATTGATCAC
CCACCCATCCCGCACCCATTTCTTATTTATCTATATTATTTAAGATATTG
AATTATACTAGTATTTACATTCATAATAACACACTACATCCCCCCTCATT
TTTTTTTC
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGTGAGTTCCAGGGGTACA
GAGACACCCTGGTCTTGAAAAGAAAAGAAGAGAAGAGAAAACAAAAGAAG
AGAAAACAAAAGAAAGCAAACAGACAAAAATATTTGGACCAAGTCCAAAA
TTTGAAAATACATATCTTAGAACCAATTAGGTCCATCCCTGTAGTTGTTT
AAATTTTCCTATAGGCTGAGGTATCTATTGGAACATGTAGTCAATATCAT
TGATGGCACTGTTTTTCAAGTTTAGGATATGTGGCCTTACTAGATTAAGT
ATGTCAATGGAAGCTGGCTTTGTGGGTTCATAGACTTGCCCTTCATTCAA
TTGTGTGTCTCTATTTAATGATTTCATTTTACTATTTGATATCTCAGTGT
TTCCACCACCACACCTGCCATGGACTAGTATCTGTCCAAGGGCCATAAGA
CAAAATAAACTTTTTCTATGAGTTGTTTTCTGTCATGGTGTTCAATCACA
GTAACAGTAGAATAGGTAATACATCCCCAGAGGCAGTATGTGTGCATGTT
CTTCTGAATTTTGTCTTTGAGACACTGCCAAGGCTCTCTGAAGAAAGTGT
TTTCCCACTGAGAATAAGACTAATATCTTTGTTCAACTGCAGGTCTTAAT
AAGACCATACTCTCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_j12.g1 MSMg01no262_j12.g1 CHROMAT_FILE:
MSMg01no262_j12.g1 PHD_FILE: MSMg01no262_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:17 2005
         (482 letters)



>mm_chr1_114412841_114413722
          Length = 882

 Score =  872 bits (451), Expect = 0.0
 Identities = 476/487 (97%), Gaps = 6/487 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgtgagttccaggggtacagagacaccctggtcttgaaaagaaa-----agaagaga 55
           |||||||||||||||||||||||||||||||| ||||||||||||||     ||||||||
Sbjct: 197 acatgtgagttccaggggtacagagacaccct-gtcttgaaaagaaaagaagagaagaga 255

                                                                       
Query: 56  agagaaaacaaaagaagagaaaacaaaagaaagcaaacagacaaaaatatttggaccaag 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agagaaaacaaaagaagagaaaacaaaagaaagcaaacagacaaaaatatttggaccaag 315

                                                                       
Query: 116 tccaaaatttgaaaatacatatcttagaaccaattaggtccatccctgtagttgtttaaa 175
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 316 tccaaaatttgaaaatacatatcttagaaccaattaggtccgtccctgtagttgtttaaa 375

                                                                       
Query: 176 ttttcctataggctgaggtatctattggaacatgtagtcaatatcattgatggcactgtt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 376 ttttcctataggctgaggtatctattggaacatgtagtcaatatcattgatgggactgtt 435

                                                                       
Query: 236 tttcaagtttaggatatgtggccttactagattaagtatgtcaatggaagctggctttgt 295
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 436 tttcaagtttaggaaatgtggccttactggattaagtatgtcaatggaagctggctttgt 495

                                                                       
Query: 296 gggttcatagacttgcccttcattcaattgtgtgtctctatttaatgatttcattttact 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gggttcatagacttgcccttcattcaattgtgtgtctctatttaatgatttcattttact 555

                                                                       
Query: 356 atttgatatctcagtgtttccaccaccacacctgccatggactagtatctgtccaagggc 415
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 556 atttgatatctcagtgtttccaccaccacacctgccatggactattatctgtccaagggc 615

                                                                       
Query: 416 cataagacaaaataaactttttctatgagttgttttctgtcatggtgttcaatcacagta 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cataagacaaaataaactttttctatgagttgttttctgtcatggtgttcaatcacagta 675

                  
Query: 476 acagtag 482
           |||||||
Sbjct: 676 acagtag 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)