Query= MSMg01no262_m05.b1 MSMg01no262_m05.b1 CHROMAT_FILE:
MSMg01no262_m05.b1 PHD_FILE: MSMg01no262_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:29 2005
(390 letters)
>mm_chr1_184358042_184358831
Length = 790
Score = 681 bits (352), Expect = 0.0
Identities = 379/390 (97%), Gaps = 4/390 (1%)
Strand = Plus / Plus
Query: 1 ttaagatgtttaattgttctaggagaaagatttacagtgagttttaattacctacggact 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttaagatgtttaattgttctaggagaaagatttacagtgagttttaattacctatggact 260
Query: 61 gcatttgcatacaggctctcataggttttgatatgctaactaatttctacttattcacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttgcatacaggctctcataggttttgatatgctaactaatttctacttattcacat 320
Query: 121 actttagagtaggtattggatttgattgaaacatttcagtttaacgtttctggagtagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttagagtaggtattggatttgattgaaacatttcagtttaacgtttctggagtagtt 380
Query: 181 aatgcatgcatgtgatatagaaataaggtttccttccgtgccctggctcctgtctcttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgcatgcatgtgatatagaaataaggtttccttccgtgccctggctcctgtctcttgc 440
Query: 241 tccccaccctcaggatctgtacttactctgtttttatatatgcttctaaagagaaatgca 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccccaccctcaggatctgaacttactctgtttttatatatgcttctaaagagaaatgca 500
Query: 301 tccataagtgtgtgtgtgtgtgtgacattcactcctgaggtcatcataccgaacccaaac 360
|||||||||||||||||||| ||| ||||||||||||||||| || ||| ||||||
Sbjct: 501 tccataagtgtgtgtgtgtg----acagtcactcctgaggtcatcgtattgaagccaaac 556
Query: 361 ttagtgcagacacctgattagtatagcaaa 390
||||||||||||||||||||||||||||||
Sbjct: 557 ttagtgcagacacctgattagtatagcaaa 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_m05.g1 MSMg01no262_m05.g1 CHROMAT_FILE:
MSMg01no262_m05.g1 PHD_FILE: MSMg01no262_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:29 2005
(462 letters)
>mm_chr1_184493609_184494470
Length = 862
Score = 727 bits (376), Expect = 0.0
Identities = 412/426 (96%), Gaps = 4/426 (0%)
Strand = Plus / Minus
Query: 38 cctgcattaatcgccaccgtcttgaagagtgttctggg----ggctgtaagatgcctcag 93
|||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct: 862 cctgcattaatcgccaccatctcaaagagtgttctgggggctggctgtaagatgcctcag 803
Query: 94 tggatacgagggcttgccgcacaagcaggacaatctacattcagaggtagagaccagaga 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tggatacgagggcttgccgcacaagcaggacaatctacattcagaggtagagaccagaga 743
Query: 154 ataaggagtctgaggtcactgtgggctaaatggtgagttcaaatccaacctgggttacgt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ataaggagtctgaggtcactgtgggctaaatggtgagttcaaatccaacctgggttacgt 683
Query: 214 gagaccctgtctctaaaatgaaataaaacagaatataaaataatcatgattcagcagttc 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gagaccctgtctctaaaatgaaataaaacagaatataaaataatcatgattcagcagttc 623
Query: 274 tgagctaagtctctaggacccatatcagagtctttagaccattcacctgcagatgattct 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgagctaagtctctaggacccatatcagagtctttagaccattcacctgcagatgattct 563
Query: 334 aaagcggccccacactggtctctgaaccagacagcctctgaggctgccagtcttcccact 393
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 562 aaagcgggttcacactggtctctgaaccagacagcctctgaggctgccggtcttcccgct 503
Query: 394 gagggtcatccacgtgttcagccctgagcttggtgcttctgagagagcttgtttacctcc 453
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 502 gagggtcatccacgtgttcagccctgagcttggtgcttctgagagagcatgtttacctgc 443
Query: 454 cagaca 459
||||||
Sbjct: 442 cagaca 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|