BAC Information

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BAC

Clone NameMSMg01-262M05
Chromosome1 (Build37)
Map Location 184,358,242 - 184,494,470
singlet/doubletdoublet
Overlap geneTrp53bp2, Capn2, LOC666624
Upstream geneCnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482
Downstream geneCapn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262M05.T7 (MSMg01no262_m05.b1)MSMg01-262M05.TJ (MSMg01no262_m05.g1)
ACCAG404774AG404775
length726739
length of high quality
(start - end)
390 (71 - 460)462 (74 - 535)
definitionCHROMAT_FILE: MSMg01no262_m05.b1 PHD_FILE: MSMg01no262_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:29 2005CHROMAT_FILE: MSMg01no262_m05.g1 PHD_FILE: MSMg01no262_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(184,358,242 - 184,358,627)(184,494,045 - 184,494,470)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAA
TTCTTTGGTAGCTGTGCTTTTTAAGATGTTTAATTGTTCTAGGAGAAAGA
TTTACAGTGAGTTTTAATTACCTACGGACTGCATTTGCATACAGGCTCTC
ATAGGTTTTGATATGCTAACTAATTTCTACTTATTCACATACTTTAGAGT
AGGTATTGGATTTGATTGAAACATTTCAGTTTAACGTTTCTGGAGTAGTT
AATGCATGCATGTGATATAGAAATAAGGTTTCCTTCCGTGCCCTGGCTCC
TGTCTCTTGCTCCCCACCCTCAGGATCTGTACTTACTCTGTTTTTATATA
TGCTTCTAAAGAGAAATGCATCCATAAGTGTGTGTGTGTGTGTGACATTC
ACTCCTGAGGTCATCATACCGAACCCAAACTTAGTGCAGACACCTGATTA
GTATAGCAAACTGTAGCCCGGAACTCGTGAACTATACAATCCTCCTGCCT
CAGCTTCCTGAGTAGCTTGGACTACAGGTATGTTCTACCACATCAGGCAT
GTATGACATTTCTCTAATCAAGTATGAAAGGATTCATGAAAAGATCTGTT
TCGTGTCTTGATCTACCGTCGTTTTTGCTGACAAACATTACCTATGATAC
TGGCTTGTTAAAATTTGCTTTTCCCGCCCATCTGAACGCTGCCTCTGGCT
ACCCTGCGAGGCTTTCAGGTACATAG
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGAACTACTTACCCACAACACAGTC
TCCCTAGTAACCTGCATTAATCGCCACCGTCTTGAAGAGTGTTCTGGGGG
CTGTAAGATGCCTCAGTGGATACGAGGGCTTGCCGCACAAGCAGGACAAT
CTACATTCAGAGGTAGAGACCAGAGAATAAGGAGTCTGAGGTCACTGTGG
GCTAAATGGTGAGTTCAAATCCAACCTGGGTTACGTGAGACCCTGTCTCT
AAAATGAAATAAAACAGAATATAAAATAATCATGATTCAGCAGTTCTGAG
CTAAGTCTCTAGGACCCATATCAGAGTCTTTAGACCATTCACCTGCAGAT
GATTCTAAAGCGGCCCCACACTGGTCTCTGAACCAGACAGCCTCTGAGGC
TGCCAGTCTTCCCACTGAGGGTCATCCACGTGTTCAGCCCTGAGCTTGGT
GCTTCTGAGAGAGCTTGTTTACCTCCCAGACAGAAACAGACAAAAGCAGG
GTTTCCCGTGATTCACCAGAAATACAAGGTCAGCATGACCTTCCGGGACA
GGAGGCAGTTATACGAAAGCTTTGGCTCCTCCGTGCCTCAGGAGTCTCCA
TTACTCCCTCAACGCCTCTATTTGCGTTAACACTCGCTCAGTGTTGGGCT
CACTGAGGGTTCACAGCTAAGTTTCCACCCTGCACAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_m05.b1 MSMg01no262_m05.b1 CHROMAT_FILE:
MSMg01no262_m05.b1 PHD_FILE: MSMg01no262_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:29 2005
         (390 letters)



>mm_chr1_184358042_184358831
          Length = 790

 Score =  681 bits (352), Expect = 0.0
 Identities = 379/390 (97%), Gaps = 4/390 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagatgtttaattgttctaggagaaagatttacagtgagttttaattacctacggact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttaagatgtttaattgttctaggagaaagatttacagtgagttttaattacctatggact 260

                                                                       
Query: 61  gcatttgcatacaggctctcataggttttgatatgctaactaatttctacttattcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttgcatacaggctctcataggttttgatatgctaactaatttctacttattcacat 320

                                                                       
Query: 121 actttagagtaggtattggatttgattgaaacatttcagtttaacgtttctggagtagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttagagtaggtattggatttgattgaaacatttcagtttaacgtttctggagtagtt 380

                                                                       
Query: 181 aatgcatgcatgtgatatagaaataaggtttccttccgtgccctggctcctgtctcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgcatgcatgtgatatagaaataaggtttccttccgtgccctggctcctgtctcttgc 440

                                                                       
Query: 241 tccccaccctcaggatctgtacttactctgtttttatatatgcttctaaagagaaatgca 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccccaccctcaggatctgaacttactctgtttttatatatgcttctaaagagaaatgca 500

                                                                       
Query: 301 tccataagtgtgtgtgtgtgtgtgacattcactcctgaggtcatcataccgaacccaaac 360
           ||||||||||||||||||||    ||| ||||||||||||||||| ||  ||| ||||||
Sbjct: 501 tccataagtgtgtgtgtgtg----acagtcactcctgaggtcatcgtattgaagccaaac 556

                                         
Query: 361 ttagtgcagacacctgattagtatagcaaa 390
           ||||||||||||||||||||||||||||||
Sbjct: 557 ttagtgcagacacctgattagtatagcaaa 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no262_m05.g1 MSMg01no262_m05.g1 CHROMAT_FILE:
MSMg01no262_m05.g1 PHD_FILE: MSMg01no262_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:29 2005
         (462 letters)



>mm_chr1_184493609_184494470
          Length = 862

 Score =  727 bits (376), Expect = 0.0
 Identities = 412/426 (96%), Gaps = 4/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 38  cctgcattaatcgccaccgtcttgaagagtgttctggg----ggctgtaagatgcctcag 93
           |||||||||||||||||| |||  ||||||||||||||    ||||||||||||||||||
Sbjct: 862 cctgcattaatcgccaccatctcaaagagtgttctgggggctggctgtaagatgcctcag 803

                                                                       
Query: 94  tggatacgagggcttgccgcacaagcaggacaatctacattcagaggtagagaccagaga 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tggatacgagggcttgccgcacaagcaggacaatctacattcagaggtagagaccagaga 743

                                                                       
Query: 154 ataaggagtctgaggtcactgtgggctaaatggtgagttcaaatccaacctgggttacgt 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ataaggagtctgaggtcactgtgggctaaatggtgagttcaaatccaacctgggttacgt 683

                                                                       
Query: 214 gagaccctgtctctaaaatgaaataaaacagaatataaaataatcatgattcagcagttc 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gagaccctgtctctaaaatgaaataaaacagaatataaaataatcatgattcagcagttc 623

                                                                       
Query: 274 tgagctaagtctctaggacccatatcagagtctttagaccattcacctgcagatgattct 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgagctaagtctctaggacccatatcagagtctttagaccattcacctgcagatgattct 563

                                                                       
Query: 334 aaagcggccccacactggtctctgaaccagacagcctctgaggctgccagtcttcccact 393
           |||||||   |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 562 aaagcgggttcacactggtctctgaaccagacagcctctgaggctgccggtcttcccgct 503

                                                                       
Query: 394 gagggtcatccacgtgttcagccctgagcttggtgcttctgagagagcttgtttacctcc 453
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 502 gagggtcatccacgtgttcagccctgagcttggtgcttctgagagagcatgtttacctgc 443

                 
Query: 454 cagaca 459
           ||||||
Sbjct: 442 cagaca 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)