Query= MSMg01no262_o18.b1 MSMg01no262_o18.b1 CHROMAT_FILE:
MSMg01no262_o18.b1 PHD_FILE: MSMg01no262_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:41 2005
(527 letters)
>mm_chr1_121405693_121406616
Length = 924
Score = 893 bits (462), Expect = 0.0
Identities = 502/516 (97%), Gaps = 3/516 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaggctcaccacaccaggctcacatgtacccaaggttggaatggaggacttgg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggctcagcacaccaggctcacatgtacccaaggttggaatggaggacttgg 264
Query: 65 gggatgagggtgagaaccaggctggagttgggggtgatctcagtagaaggtgcccgtgct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggatgagggtgagaaccaggctggagttgggggtgatctcagtagaaggtgcccgtgct 324
Query: 125 gctccccttgggctctgagctccatcctcagcaccgtgtagcaagaagcataaggaaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctccccttgggctctgagctccatcctcagcaccgtgtagcaagaagcataaggaaaaa 384
Query: 185 gccagtgtcagagggagagaggctcaagggaactggattccatccgtggaagcccagaat 244
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccagtgttagagcgagagaggctcaagggaactggattccatccgtggaagcccagaat 444
Query: 245 gggagcccacaaggaaaatcaaagtcctgtgcagtccatcttctctacccatactcaagg 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggagcccacaag-aaaatcaaagtcctgtgcagtccatcttctctacccatactcaagg 503
Query: 305 caacccggatggcaagcacgtgttttccaccttacgtctcagccagggctgtaggtacag 364
||||||||||||||||||| || |||||||||||||||||||||||||||| ||| ||||
Sbjct: 504 caacccggatggcaagcacatgctttccaccttacgtctcagccagggctgcagggacag 563
Query: 365 agagtccaccacggagactgtgactcattctgactcagggctgacacctcacagccagtc 424
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 agagtccaggacggagactg--actcattctgactcagggctgacacctcacagccagtt 621
Query: 425 tttgtaccctccctgcctggccaacaagccaccacctcagtctgctgtacaggaaatcaa 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 622 tttgtaccctccctgcctggccaacaagccaccacctcagcctgctgtacaggaaatcaa 681
Query: 485 gacctaggtgccacccttctcagtgactcctgaagt 520
||||||||||||||||||||||||||||||||||||
Sbjct: 682 gacctaggtgccacccttctcagtgactcctgaagt 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 924
Length adjustment: 10
Effective length of query: 517
Effective length of database: 914
Effective search space: 472538
Effective search space used: 472538
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_o18.g1 MSMg01no262_o18.g1 CHROMAT_FILE:
MSMg01no262_o18.g1 PHD_FILE: MSMg01no262_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:41 2005
(504 letters)
>mm_chr1_121548585_121549487
Length = 903
Score = 949 bits (491), Expect = 0.0
Identities = 501/505 (99%), Gaps = 3/505 (0%)
Strand = Plus / Minus
Query: 1 ctgccattcatgtttaaacaatccacacatagcaacagtgaacaggataaaaatgctggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctgccattcatgtttaaacaatccacacatagcaacagtgaacaggataaaaatgctggt 644
Query: 61 ttgcattgaaactgttttagtcctaacctcaatttatattatgcaaaatacatttacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttgcattgaaactgttttagtcctaacctcaatttatattatgcaaaatacatttacaga 584
Query: 121 tattttgttggttatatttcattttgatttagtacttgttctggtacaaatgtgaaacga 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 583 tattttgttggttatatttcattttgatttagtacttgttcaggtacaaatgtgaaacg- 525
Query: 181 aaaaaaaaaaacccacctagctgttaatgttcaattgaaaaataaagatgcgctttagta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 -aaaaaaaaaacccacctagctgttaatgttcaattgaaaaataaagatgcgctttagta 466
Query: 241 atctaatgacttcgtttcaaggttcttttatggagacttattg-tagaccaatgaccgtg 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 465 atctaatgacttcgtttcaaggttcttttatggagacttattgttagaccaatgaccgtg 406
Query: 300 atttattcattaatgggtgatcagttagaagggatggctgaatgctaaacctgatgttta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atttattcattaatgggtgatcagttagaagggatggctgaatgctaaacctgatgttta 346
Query: 360 tttctacaatcagtagtgcacatggtgtctcttctctgaaggggggagtagagattctaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttctacaatcagtagtgcacatggtgtctcttctctgaaggggggagtagagattctaa 286
Query: 420 aaagaatttagaaacttgaagactatttgtgcgtgtgctatgtgtgtggtgtatgcatgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaagaatttagaaacttgaagactatttgtgcgtgtgctatgtgtgtggtgtatgcatgt 226
Query: 480 gtatgtgctggtacagccaccaatg 504
|||||||||||||||||||||||||
Sbjct: 225 gtatgtgctggtacagccaccaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
